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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE TRANSLATION INITIATION INHIBITOR PH0854 FROM PYROCOCCUS HORIKOSHII
 
Authors :  Ihsanawati, S. Kishishita, K. Murayama, L. Chen, Z. J. Liu, B. C. Wang, M. Shirouzu, Y. Bessho, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  19 Sep 06  (Deposition) - 19 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Putative Translation Initiation Inhibitor, Pyrococcus Horikoshii, Trimer, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ihsanawati, S. Kishishita, K. Murayama, L. Chen, Z. J. Liu, B. C. Wang, M. Shirouzu, Y. Bessho, S. Yokoyama
Crystal Structure Of Putative Translation Initiation Inhibitor Ph0854 From Pyrococcus Horikoshii
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0076 PROTEIN PH0854
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21-CODONPLUS (DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953
    Synonym: PUTATIVE TRANSLATION INITIATION INHIBITOR

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2DYY)

(-) Sites  (0, 0)

(no "Site" information available for 2DYY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DYY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DYY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DYY)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y854_PYRHO101-119
 
 
 
 
 
 
 
 
 
 
 		  12A:101-119
B:101-119
C:101-119
D:101-119
E:101-119
F:101-119
G:101-119
H:101-119
I:101-119
J:101-119
K:101-119
L:101-119
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y854_PYRHO101-119
 
 
 
 
 
 
 
 
 
 
 		  3A:101-119
B:101-119
C:101-119
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y854_PYRHO101-119
 
 
 
 
 
 
 
 
 
 
 		  3-
-
-
D:101-119
E:101-119
F:101-119
-
-
-
-
-
-
Biological Unit 3 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y854_PYRHO101-119
 
 
 
 
 
 
 
 
 
 
 		  3-
-
-
-
-
-
G:101-119
H:101-119
I:101-119
-
-
-
Biological Unit 4 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UPF0076PS01094 Uncharacterized protein family UPF0076 signature.Y854_PYRHO101-119
 
 
 
 
 
 
 
 
 
 
 		  3-
-
-
-
-
-
-
-
-
J:101-119
K:101-119
L:101-119

(-) Exons   (0, 0)

(no "Exon" information available for 2DYY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyya_ A: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyA00 A:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee..-...hhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy A   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-NDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80| |     90       100       110       120      
                                                                                                           81 |                                           
                                                                                                             83                                           


Chain B from PDB  Type:PROTEIN  Length:119
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyb_ B: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyB00 B:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeeee.-------...hhhhhh....eeeeeee..hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy B   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-------NEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80|       90       100       110       120      
                                                                                                           81      89                                     


Chain C from PDB  Type:PROTEIN  Length:119
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyc_ C: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyC00 C:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee..-------hhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy C   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-------NEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80|       90       100       110       120      
                                                                                                           81      89                                     


Chain D from PDB  Type:PROTEIN  Length:126
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyd_ D: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyD00 D:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee......hhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy D   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80        90       100       110       120      


Chain E from PDB  Type:PROTEIN  Length:120
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    10        20        30        40        50        60        70        80        90       100       110       120     
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYK 125
               SCOP domains d2dyye_ E: automated matches                                                                                                  SCOP domains
               CATH domains 2dyyE00 E:1-125  [code=3.30.1330.40, no nam e defined]                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee...........-.hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee..----.hhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dyy E   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIV-GDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD----AKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYK 125
                                    10        20        30        40  | |   50        60        70        80|    |  90       100       110       120     
                                                                     43 |                                  81   86                                       
                                                                       45                                                                                


Chain F from PDB  Type:PROTEIN  Length:118
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
           Y854_PYRHO     2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyf_ F: automated matches                                                                                                  SCOP domains
               CATH domains 2dyyF00 F:2-126  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.-------..hhhhhhh.....eeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dyy F   2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLK-------MNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    11        21        31        41        51        61        71        |-      | 91       101       111       121     
                                                                                                         80      88                                      


Chain G from PDB  Type:PROTEIN  Length:125
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
           Y854_PYRHO     2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyg_ G: automated matches                                                                                                  SCOP domains
               CATH domains 2dyyG00 G:2-126  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee....hhhhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dyy G   2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    11        21        31        41        51        61        71        81        91       101       111       121     


Chain H from PDB  Type:PROTEIN  Length:122
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyh_ H: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyH00 H:1-126  [code=3.30.1330.40, no nam e defined]                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee...........-.hhhhhhhhhhhhhhhhhhhh......eeeeeeee..---.....hhhhhhh.....eeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy H   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIV-GDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD---FAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40  | |   50        60        70        80|   |   90       100       110       120      
                                                                     43 |                                  81  85                                         
                                                                       45                                                                                 


Chain I from PDB  Type:PROTEIN  Length:116
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
           Y854_PYRHO     2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyi_ I: automated matches                                                                                                  SCOP domains
               CATH domains 2dyyI00 I:2-126  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............eeee..eeeeeee..............hhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee..---------hhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dyy I   2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD---------VYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    11        21        31        41        51        61        71        81        91       101       111       121     
                                                                                                          81        91                                   


Chain J from PDB  Type:PROTEIN  Length:124
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyj_ J: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyJ00 J:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee.--...hhhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy J   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLK--NDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80  |     90       100       110       120      
                                                                                                          80 83                                           


Chain K from PDB  Type:PROTEIN  Length:123
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:125
                                    11        21        31        41        51        61        71        81        91       101       111       121     
           Y854_PYRHO     2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyk_ K: automated matches                                                                                                  SCOP domains
               CATH domains 2dyyK00 K:2-126  [code=3.30.1330.40, no name defined]                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhh...hhh.eeeeeeee..--...hhhhhhhhhhh....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dyy K   2 KEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD--DFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    11        21        31        41        51        61        71        81  |     91       101       111       121     
                                                                                                          81 84                                          


Chain L from PDB  Type:PROTEIN  Length:119
 aligned with Y854_PYRHO | O58584 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
           Y854_PYRHO     1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
               SCOP domains d2dyyl_ L: automated matches                                                                                                   SCOP domains
               CATH domains 2dyyL00 L:1-126  [code=3.30.1330.40, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee..............eeee..eeeeeee.............hhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeee..-------hhhhhhhh.....eeeeee...hhhhh.eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------UPF0076            ------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2dyy L   1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKD-------NEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIAYKE 126
                                    10        20        30        40        50        60        70        80|       90       100       110       120      
                                                                                                           81      89
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DYY)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2DYY)

 Visualization

(-) Interactive Views

Asymmetric Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2dyy)
 
  Sites
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