2DLV - JenaLib

Title :   SOLUTION STRUCTURE OF THE RGS DOMAIN OF HUMAN REGULATOR OF G-PROTEIN SIGNALING 18

Authors :   H. P. Zhang, T. Suetake, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   20 Apr 06 (Deposition) - 17 Apr 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Rgs Domain, Regulator Of G-Protein Signaling 18, Rgs18, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. P. Zhang, T. Suetake, F. Hayashi, S. Yokoyama
Solution Structure Of The Rgs Domain Of Human Regulator Of G-Protein Signaling 18
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (5, 5)

NMR Structure (5, 5)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000367460	1a	ENSE00001444556	chr1:192127587-192127886	300	RGS18_HUMAN	1-40	40	1	A:1-2	2
1.2	ENST00000367460	2	ENSE00000995892	chr1:192128350-192128451	102	RGS18_HUMAN	40-74	35	1	A:3-7	5
1.3a	ENST00000367460	3a	ENSE00000995891	chr1:192129508-192129569	62	RGS18_HUMAN	74-95	22	1	A:8-27	20
1.6b	ENST00000367460	6b	ENSE00000995890	chr1:192150422-192150588	167	RGS18_HUMAN	95-150	56	1	A:27-82	56
1.7	ENST00000367460	7	ENSE00001444555	chr1:192153427-192154945	1519	RGS18_HUMAN	151-235	85	1	A:83-140 (gaps)	67

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:140
 aligned with RGS18_HUMAN | Q9NS28 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:191
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 
          RGS18_HUMAN    27 GSGKEETSKEAKIRAKEKRNRLSLLVQKPEFHEDTRSSRSGHLAKETRVSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRPQRPTNLRRRSR 217
               SCOP domains d2                                  dlva_         A: automated matches                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..----------------------------------.....--------..hhhhhh...hhhhhh.hhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhh.............hhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhh..hhhhhhh..----..-----.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------RGS  PDB: A:18-134 UniProt: 86-202                                                                                   --------------- PROSITE
           Transcript 1 (1) Exon 1.1a     ---------------------------------Exon 1.3a  PDB: A:8-27-------------------------------------------------------Exon 1.7  PDB: A:83-140 (gaps) UniProt: 151-235 [INCOMPLETE]        Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.2  PDB: A:3-7 UniProt: 40-74--------------------Exon 1.6b  PDB: A:27-82 UniProt: 95-150                 ------------------------------------------------------------------- Transcript 1 (2)
                 2dlv A   1 GS----------------------------------SGSSG--------SPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMSG----PS-----SG 140
                             |       -         -         -      |  6|        8        18        28        38        48        58        68        78        88        98       108       118       128       | -  ||   139 
                             2                                  3   7        8                                                                                                                             136  137|   139 
                                                                                                                                                                                                                 138

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

NMR Structure(hide GO term definitions)

Chain A (RGS18_HUMAN | Q9NS28)

molecular function
	GO:0005096	GTPase activator activity	Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
biological process
	GO:0007186	G-protein coupled receptor signaling pathway	A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
	GO:0009968	negative regulation of signal transduction	Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.
	GO:0043547	positive regulation of GTPase activity	Any process that activates or increases the activity of a GTPase.
	GO:0008277	regulation of G-protein coupled receptor protein signaling pathway	Any process that modulates the frequency, rate or extent of G-protein coupled receptor protein signaling pathway activity.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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