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Title :   CRYSTAL STRUCTURE OF TT0972 PROTEIN FROM THERMUS THERMOPHILUS WITH CS(+) IONS

Authors :   E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   17 Feb 06 (Deposition) - 01 May 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F  (2x)
Biol. Unit 2: B (1x),C (1x),E (1x)
Biol. Unit 3: A (1x),D (1x),F (1x)

Keywords :   Dodecamer, Flavin, Cesium Ion, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Inagaki, N. Nakano, A. Shinkai, S. Yokoyama
Crystal Structure Of Tt0972 Protein From Thermus Thermophilus
To Be Published
PubMed: search

Molecule 1 - TT0972 PROTEIN
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Strain	:	DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (2x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:		B (1x)	C (1x)		E (1x)
Biological Unit 3 (1x)	:	A (1x)			D (1x)		F (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 4)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	CS	1	Ligand/Ion	CESIUM ION
3	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CS	-1	Ligand/Ion	CESIUM ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CS	-1	Ligand/Ion	CESIUM ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CS	-1	Ligand/Ion	CESIUM ION
3	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:6 , LYS D:6 , LYS F:6	BINDING SITE FOR RESIDUE CL A 1001
2	AC2	SOFTWARE	LYS B:6 , LYS C:6 , LYS E:6	BINDING SITE FOR RESIDUE CL B 1002
3	AC3	SOFTWARE	GLU A:19 , GLU B:19 , GLU C:19 , GLU D:68	BINDING SITE FOR RESIDUE CS A 1003
4	AC4	SOFTWARE	GLU D:19 , GLU E:19 , GLU F:19	BINDING SITE FOR RESIDUE NA D 1004

(no "SS Bond" information available for 2DEV)

(no "Cis Peptide Bond" information available for 2DEV)

(no "SAP(SNP)/Variant" information available for 2DEV)

(no "PROSITE Motif" information available for 2DEV)

(no "Exon" information available for 2DEV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:68
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2deva_ A: automated matches                                         SCOP domains
               CATH domains 2devA00 A:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2dev A  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61

Chain B from PDB  Type:PROTEIN  Length:68
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:68
                                    11        21        31        41        51        61        
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
               SCOP domains d2devb_ B: automated matches                                         SCOP domains
               CATH domains 2devB00 B:2-69 Flavin-binding protein dodecin                        CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  2dev B  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEET 69
                                    11        21        31        41        51        61

Chain C from PDB  Type:PROTEIN  Length:67
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2devc_ C: automated matches                                        SCOP domains
               CATH domains 2devC00 C:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2dev C  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61

Chain D from PDB  Type:PROTEIN  Length:67
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2devd_ D: automated matches                                        SCOP domains
               CATH domains 2devD00 D:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2dev D  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61

Chain E from PDB  Type:PROTEIN  Length:67
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2deve_ E: automated matches                                        SCOP domains
               CATH domains 2devE00 E:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2dev E  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61

Chain F from PDB  Type:PROTEIN  Length:67
 aligned with Q72IR6_THET2 | Q72IR6 from UniProtKB/TrEMBL  Length:69

    Alignment length:67
                                    11        21        31        41        51        61       
          Q72IR6_THET2    2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
               SCOP domains d2devf_ F: automated matches                                        SCOP domains
               CATH domains 2devF00 F:2-68 Flavin-binding protein dodecin                       CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  2dev F  2 GKVYKKVELVGTSEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGVKEYQVVLEVGFRLEE 68
                                    11        21        31        41        51        61

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Dodecin subunit-like (56)

Superfamily: Dodecin-like (33)

Family: Dodecin-like (29)

Protein domain: automated matches (24)

Thermus thermophilus [TaxId: 274] (3)

1a	d2deva_	A:
1b	d2devb_	B:
1c	d2devc_	C:
1d	d2devd_	D:
1e	d2deve_	E:
1f	d2devf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dodecin subunit-like (24)

Homologous Superfamily: Flavin-binding protein dodecin (24)

Thermus thermophilus. Organism_taxid: 274. (3)

1a	2devC00	C:2-68
1b	2devD00	D:2-68
1c	2devE00	E:2-68
1d	2devF00	F:2-68
1e	2devA00	A:2-69
1f	2devB00	B:2-69

(no "Pfam Domain" information available for 2DEV)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2DEV)

Asymmetric Unit
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2cz8	THE SAME PROTEIN COMPLEXED WITH PHOSPHATE IONS, POTASSIUM IONS AND FLAVIN COMPAUNDS.
2deg	THE SAME PROTEIN COMPLEXED WITH MANGANESE IONS.
2deh	THE SAME PROTEIN COMPLEXED WITH CHROLIDE IONS. RELATED ID: TTK003000972.4 RELATED DB: TARGETDB

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