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(-) Description

Title :  PROTEIN OF UNKNOWN FUNCTION FROM PYROCOCCUS HORIKOSHI
 
Authors :  P. H. Rehse, S. Yokoyama, Riken Structural Genomics/Proteomics In (Rsgi)
Date :  07 Feb 06  (Deposition) - 13 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hexamer, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. H. Rehse, S. Yokoyama
X-Ray Structure Of Unknown Protein From Pyrococcus Horikosh
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 190AA LONG HYPOTHETICAL PROTEIN
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET-11A
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificPYROCOCCUS HORIKOSHII
    Organism Taxid70601
    StrainOT3

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1GAI8Ligand/IonGUANIDINE
2GOL6Ligand/IonGLYCEROL

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN B:101 , GLU C:11BINDING SITE FOR RESIDUE GAI B 507
02AC2SOFTWAREARG E:187 , TRP E:188BINDING SITE FOR RESIDUE GAI E 508
03AC3SOFTWARETRP E:100 , TRP F:100 , GLU F:105BINDING SITE FOR RESIDUE GAI F 509
04AC4SOFTWAREHOH A:555BINDING SITE FOR RESIDUE GAI A 510
05AC5SOFTWAREARG E:12 , ASN E:29 , PHE E:30BINDING SITE FOR RESIDUE GAI E 511
06AC6SOFTWAREILE B:14 , ASN B:29 , PHE B:30 , GLU C:105 , HOH C:579BINDING SITE FOR RESIDUE GAI C 512
07AC7SOFTWAREARG D:12BINDING SITE FOR RESIDUE GAI D 513
08AC8SOFTWAREARG A:12 , ILE A:14 , ASN A:29BINDING SITE FOR RESIDUE GAI A 514
09AC9SOFTWARETYR A:16 , VAL A:52 , ASP A:53 , ASP A:56 , HOH A:549 , HOH A:560BINDING SITE FOR RESIDUE GOL A 501
10BC1SOFTWARETYR B:16 , MET B:51 , VAL B:52 , ASP B:53 , HIS B:135 , HOH B:526 , HOH B:544BINDING SITE FOR RESIDUE GOL B 502
11BC2SOFTWARETYR C:16 , GLU C:50 , MET C:51 , VAL C:52 , ASP C:53 , ASP C:56 , ILE C:124 , HOH C:523 , HOH C:585BINDING SITE FOR RESIDUE GOL C 503
12BC3SOFTWARETYR D:16 , VAL D:52 , ASP D:53 , ASP D:56 , ILE D:124 , HIS D:135BINDING SITE FOR RESIDUE GOL D 504
13BC4SOFTWARETYR E:16 , GLU E:50 , MET E:51 , VAL E:52 , ASP E:53 , ASP E:56 , HOH E:540 , HOH E:546BINDING SITE FOR RESIDUE GOL E 505
14BC5SOFTWARETYR F:16 , MET F:51 , VAL F:52 , ASP F:53 , ASP F:56 , HOH F:559BINDING SITE FOR RESIDUE GOL F 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2DDZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2DDZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DDZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DDZ)

(-) Exons   (0, 0)

(no "Exon" information available for 2DDZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:188
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:188
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
         O57962_PYRHO     3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddza1 A:3-190 Uncharacterized protein PH0223                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........hhhhh.hhhhhhhh....eeeeeeeeee.hhhhh.hhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeee..eeee..ee.eeeeeee....eeeeeeee.............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz A   3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:188
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
         O57962_PYRHO     3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddzb_ B: Uncharacterized protein PH0223                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhh.hhhhhhhh....eeeeeeeeee.......hhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....eee..eeee..ee.eeeeeeee..eeeeeeeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz B   3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        

Chain C from PDB  Type:PROTEIN  Length:188
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:188
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
         O57962_PYRHO     3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddzc_ C: Uncharacterized protein PH0223                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........hhhhh.hhhhhhhh....eeeeeeeeee.hhhhh.hhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeee..eeee..ee.eeeeeeee..eeeeeeeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz C   3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        

Chain D from PDB  Type:PROTEIN  Length:188
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:188
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
         O57962_PYRHO     3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddzd_ D: Uncharacterized protein PH0223                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........hhhhh.hhhhhhhh....eeeeeeeeee.hhhhh.hhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeee..ee.eeeeeeee..eeeeeeeee....................hhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz D   3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        

Chain E from PDB  Type:PROTEIN  Length:190
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:190
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
         O57962_PYRHO     1 MNSMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddze_ E: Uncharacterized protein PH0223                                                                                                                                                      SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.........hhhhh.hhhhhhhh....eeeeeeeeee.......hhhhhhhh...eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeee..eeee..ee.eeeeeeee..eeeeeeeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz E   1 MNSMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain F from PDB  Type:PROTEIN  Length:188
 aligned with O57962_PYRHO | O57962 from UniProtKB/TrEMBL  Length:190

    Alignment length:188
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        
         O57962_PYRHO     3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
               SCOP domains d2ddzf_ F: Uncharacterized protein PH0223                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.........hhhhh.hhhhhhhh....eeeeeeeeee.hhhhh.hhhhhhh....eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....eeee..eeee..ee.eeeeeee....eeeeeeeeee............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ddz F   3 SMELLIIKERRIDYDGSAIRSHWAYRNFGILGDSLVVFRGKCNVKVEEMVDIEDLRLRKEIKGDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNYGIEASRRGDDIYVNGRKLSISIATVSPVSIKIHIGLNVKTVGVPPGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSLKVRWVT 190
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DDZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DDZ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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