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2DDZ
Asym. Unit
Info
Asym.Unit (199 KB)
Biol.Unit 1 (194 KB)
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(1)
Title
:
PROTEIN OF UNKNOWN FUNCTION FROM PYROCOCCUS HORIKOSHI
Authors
:
P. H. Rehse, S. Yokoyama, Riken Structural Genomics/Proteomics In (Rsgi)
Date
:
07 Feb 06 (Deposition) - 13 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.24
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hexamer, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. H. Rehse, S. Yokoyama
X-Ray Structure Of Unknown Protein From Pyrococcus Horikosh
To Be Published
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close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: GUANIDINE (GAIa)
1b: GUANIDINE (GAIb)
1c: GUANIDINE (GAIc)
1d: GUANIDINE (GAId)
1e: GUANIDINE (GAIe)
1f: GUANIDINE (GAIf)
1g: GUANIDINE (GAIg)
1h: GUANIDINE (GAIh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GAI
8
Ligand/Ion
GUANIDINE
2
GOL
6
Ligand/Ion
GLYCEROL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:101 , GLU C:11
BINDING SITE FOR RESIDUE GAI B 507
02
AC2
SOFTWARE
ARG E:187 , TRP E:188
BINDING SITE FOR RESIDUE GAI E 508
03
AC3
SOFTWARE
TRP E:100 , TRP F:100 , GLU F:105
BINDING SITE FOR RESIDUE GAI F 509
04
AC4
SOFTWARE
HOH A:555
BINDING SITE FOR RESIDUE GAI A 510
05
AC5
SOFTWARE
ARG E:12 , ASN E:29 , PHE E:30
BINDING SITE FOR RESIDUE GAI E 511
06
AC6
SOFTWARE
ILE B:14 , ASN B:29 , PHE B:30 , GLU C:105 , HOH C:579
BINDING SITE FOR RESIDUE GAI C 512
07
AC7
SOFTWARE
ARG D:12
BINDING SITE FOR RESIDUE GAI D 513
08
AC8
SOFTWARE
ARG A:12 , ILE A:14 , ASN A:29
BINDING SITE FOR RESIDUE GAI A 514
09
AC9
SOFTWARE
TYR A:16 , VAL A:52 , ASP A:53 , ASP A:56 , HOH A:549 , HOH A:560
BINDING SITE FOR RESIDUE GOL A 501
10
BC1
SOFTWARE
TYR B:16 , MET B:51 , VAL B:52 , ASP B:53 , HIS B:135 , HOH B:526 , HOH B:544
BINDING SITE FOR RESIDUE GOL B 502
11
BC2
SOFTWARE
TYR C:16 , GLU C:50 , MET C:51 , VAL C:52 , ASP C:53 , ASP C:56 , ILE C:124 , HOH C:523 , HOH C:585
BINDING SITE FOR RESIDUE GOL C 503
12
BC3
SOFTWARE
TYR D:16 , VAL D:52 , ASP D:53 , ASP D:56 , ILE D:124 , HIS D:135
BINDING SITE FOR RESIDUE GOL D 504
13
BC4
SOFTWARE
TYR E:16 , GLU E:50 , MET E:51 , VAL E:52 , ASP E:53 , ASP E:56 , HOH E:540 , HOH E:546
BINDING SITE FOR RESIDUE GOL E 505
14
BC5
SOFTWARE
TYR F:16 , MET F:51 , VAL F:52 , ASP F:53 , ASP F:56 , HOH F:559
BINDING SITE FOR RESIDUE GOL F 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2ddza1 (A:3-190)
1b: SCOP_d2ddzb_ (B:)
1c: SCOP_d2ddzc_ (C:)
1d: SCOP_d2ddzd_ (D:)
1e: SCOP_d2ddze_ (E:)
1f: SCOP_d2ddzf_ (F:)
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Protein Domains
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Organisms
(
)
(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
PH0223-like
(1)
Protein domain
:
Uncharacterized protein PH0223
(1)
Pyrococcus horikoshii [TaxId: 53953]
(1)
1a
d2ddza1
A:3-190
1b
d2ddzb_
B:
1c
d2ddzc_
C:
1d
d2ddzd_
D:
1e
d2ddze_
E:
1f
d2ddzf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Atom Selection
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Chain A
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Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (199 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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