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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  K. Ito, R. Arai, T. Kamo-Uchikubo, M. Shirouzu, S. Yokoyama, Riken Str Genomics/Proteomics Initiative (Rsgi)
Date :  13 Jul 05  (Deposition) - 13 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Glycolysis, Nad, Oxidoreductase, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Ito, R. Arai, T. Kamo-Uchikubo, M. Shirouzu, S. Yokoyama
Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.2.1.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)-CODONPLUS-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PH1830
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3
    Synonym: GAPDH, NADP, -DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2PO45Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:140 , CYS A:141 , ASN A:142 , ARG A:166 , HIS A:191 , HIS A:192 , HOH A:644 , HOH A:746BINDING SITE FOR RESIDUE PO4 A 601
2AC2SOFTWAREARG A:166 , ARG A:167 , ALA A:168 , ARG A:176 , HOH A:737BINDING SITE FOR RESIDUE PO4 A 602
3AC3SOFTWARESER B:140 , CYS B:141 , ASN B:142 , ARG B:166 , HIS B:191 , HIS B:192 , HOH B:691BINDING SITE FOR RESIDUE PO4 B 603
4AC4SOFTWARESER C:140 , CYS C:141 , ASN C:142 , ARG C:166 , HIS C:191 , HIS C:192 , HOH C:679 , HOH C:681 , HOH C:703BINDING SITE FOR RESIDUE PO4 C 604
5AC5SOFTWARESER D:140 , CYS D:141 , ASN D:142 , HIS D:191 , HIS D:192 , HOH D:653BINDING SITE FOR RESIDUE PO4 D 605
6AC6SOFTWAREASN A:8 , TYR A:10 , GLY A:11 , THR A:12 , ILE A:13 , THR A:35 , ALA A:54 , ALA A:86 , THR A:87 , PRO A:88 , GLN A:109 , GLY A:111 , CYS A:141 , ARG A:167 , ASP A:170 , GLN A:298 , HOH A:614 , HOH A:621 , HOH A:625 , HOH A:682 , HOH A:747 , HOH A:749BINDING SITE FOR RESIDUE NAD A 501
7AC7SOFTWAREASN B:8 , GLY B:9 , TYR B:10 , GLY B:11 , THR B:12 , ILE B:13 , THR B:35 , ALA B:54 , ALA B:86 , THR B:87 , PRO B:88 , GLN B:109 , GLY B:111 , CYS B:141 , ARG B:167 , ASP B:170 , GLN B:298 , HOH B:617 , HOH B:640 , HOH B:650 , HOH B:672 , HOH B:726 , HOH B:728BINDING SITE FOR RESIDUE NAD B 502
8AC8SOFTWAREASN C:8 , GLY C:9 , TYR C:10 , GLY C:11 , THR C:12 , ILE C:13 , ALA C:86 , THR C:87 , GLN C:109 , GLY C:111 , CYS C:141 , ARG C:167 , ASP C:170 , GLN C:298 , HOH C:613 , HOH C:643 , HOH C:679 , HOH C:710 , HOH C:714 , HOH C:715 , HOH C:716BINDING SITE FOR RESIDUE NAD C 503
9AC9SOFTWAREASN D:8 , TYR D:10 , GLY D:11 , THR D:12 , ILE D:13 , ALA D:54 , ALA D:86 , THR D:87 , PRO D:88 , GLY D:89 , GLN D:109 , GLY D:111 , CYS D:141 , ARG D:167 , ASP D:170 , GLN D:298 , HOH D:610 , HOH D:642 , HOH D:675 , HOH D:695 , HOH D:696BINDING SITE FOR RESIDUE NAD D 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CZC)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly A:177 -Pro A:178
2Val A:188 -Pro A:189
3Gly B:177 -Pro B:178
4Val B:188 -Pro B:189
5Gly C:177 -Pro C:178
6Val C:188 -Pro C:189
7Gly D:177 -Pro D:178
8Val D:188 -Pro D:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CZC)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3P_PYRHO139-146
 
 
 		  4A:139-146
B:139-146
C:139-146
D:139-146

(-) Exons   (0, 0)

(no "Exon" information available for 2CZC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:334
 aligned with G3P_PYRHO | O59494 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
            G3P_PYRHO     1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
               SCOP domains d2czca2 A:1-139,A:302-334 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                 d2czca1 A:140-301 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2czca2 A:1-139,A:302-334         SCOP domains
               CATH domains 2czcA01 A:1-139,A:302-334 NAD(P)-binding Rossmann-like Domain                                                                              2czcA02 A:140-301 Dihydrodipicolinate Reductase; domain 2                                                                                                         2czcA01 A:1-139,A:302-334         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhh...eee.hhhhhhhhhhhh.....hhhhhhh...eeee....hhhhhhhhhhhhhh.eeee....hhhhh.eeehhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeeeeeeeeee...............ee......hhhhhhh......eeeeeeee.....eeeeeeeee....hhhhhhhhhhh...eeeehhhhh..hhhhhhhhhhhh.hhhhh...eeee.hhheee..eeeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2czc A   1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    


Chain B from PDB  Type:PROTEIN  Length:333
 aligned with G3P_PYRHO | O59494 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:333
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
            G3P_PYRHO     2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
               SCOP domains d2czcb1 B:2-139,B:302-334 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                d2czcb2 B:140-301 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2czcb1 B:2-139,B:302-334         SCOP domains
               CATH domains 2czcB01 B:2-139,B:302-334 NAD(P)-binding Rossmann-like Domain                                                                             2czcB02 B:140-301 Dihydrodipicolinate Reductase; domain 2                                                                                                         2czcB01 B:2-139,B:302-334         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhh...eee....hhhhhhhh......hhhhhhhhh.eeee....hhhhhhhhhhhhhh.eeee....hhhhh.eeehhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeeeeeeeeee...............ee......hhhhhhh......eeeeeeee.....eeeeeeeee....hhhhhhhhhhh...eeeehhhhh..hhhhhhhhhhhh.hhhhh...eeee.hhheee..eeeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2czc B   2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   


Chain C from PDB  Type:PROTEIN  Length:333
 aligned with G3P_PYRHO | O59494 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:333
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
            G3P_PYRHO     2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
               SCOP domains d2czcc1 C:2-139,C:302-334 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                d2czcc2 C:140-301 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2czcc1 C:2-139,C:302-334         SCOP domains
               CATH domains 2czcC01 C:2-139,C:302-334 NAD(P)-binding Rossmann-like Domain                                                                             2czcC02 C:140-301 Dihydrodipicolinate Reductase; domain 2                                                                                                         2czcC01 C:2-139,C:302-334         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhh...eee.hhhhhhhhhhh......hhhhhhhh..eeee....hhhhhhhhhhhhhh.eeee....hhhhh.eeehhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeeeeeeeeee...............ee......hhhhhhh......eeeeeeee.....eeeeeeeee....hhhhhhhhhhh...eeeehhhhh..hhhhhhhhhhhh.hhhhh...eeee.hhheee..eeeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------GAPDH   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2czc C   2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGILK 334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   


Chain D from PDB  Type:PROTEIN  Length:332
 aligned with G3P_PYRHO | O59494 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:332
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331  
            G3P_PYRHO     2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGIL 333
               SCOP domains d2czcd1 D:2-139,D:302-333 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                d2czcd2 D:140-301 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)                                                                                                d2czcd1 D:2-139,D:302-333        SCOP domains
               CATH domains 2czcD01 D:2-139,D:302-333 NAD(P)-binding Rossmann-like Domain                                                                             2czcD02 D:140-301 Dihydrodipicolinate Reductase; domain 2                                                                                                         2czcD01 D:2-139,D:302-333        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhh...eee.hhhhhhhhhhh......hhhhhhh...eeee....hhhhhhhhhhhhh..eeee....hhhhh.eeehhhhhhhhhh...eeee.hhhhhhhhhhhhhhh..eeeeeeeeeee...............ee......hhhhhhh......eeeeeeee.....eeeeeeeee....hhhhhhhhhhh...eeeehhhhh..hhhhhhhhhhhh.hhhhh...eeee.hhheee..eeeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------GAPDH   ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2czc D   2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAADPNDTKRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFELADKWDSIKKTNKSLGIL 333
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CZC)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (G3P_PYRHO | O59494)
molecular function
    GO:0008839    4-hydroxy-tetrahydrodipicolinate reductase    Catalysis of the reaction: (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+.
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0043891    glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD(P)+ = 3-phospho-D-glyceroyl phosphate + NAD(P)H + H+.
    GO:0004365    glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD+ = 3-phospho-D-glyceroyl phosphate + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0009089    lysine biosynthetic process via diaminopimelate    The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2czc
    Family and Domain Information: ProDom | SYSTERS
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    Orientation in Membranes: OPM
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