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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENAS PYROCOCCUS HORIKOSHII OT3
Keywords GLYCOLYSIS, NAD, OXIDOREDUCTASE, STRUCTURAL GENOMICS, NPPSFA NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALY RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2CZC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  A 334 2627 0
2  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  B 333 2619 0
3  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  C 333 2619 0
4  Protein   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  D 332 2609 0
5  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  A 3 0 54
6  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  B 2 0 49
7  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  C 2 0 49
8  Ligand   GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  D 2 0 49
9 Water     478 0 478
total       1819 10474 679
Proteins
Unit 1 MET1 LYS2 VAL3 LYS4 VAL5 GLY6 VAL7 ASN8 GLY9 TYR10 GLY11 THR12 ILE13 GLY14 LYS15 ARG16 VAL17 ALA18 TYR19 ALA20 VAL21 THR22 LYS23 GLN24 ASP25 ASP26 MET27 GLU28 LEU29 ILE30 GLY31 ILE32 THR33 LYS34 THR35 LYS36 PRO37 ASP38 PHE39 GLU40 ALA41 TYR42 ARG43 ALA44 LYS45 GLU46 LEU47 GLY48 ILE49 PRO50 VAL51 TYR52 ALA53 ALA54 SER55 GLU56 GLU57 PHE58 ILE59 PRO60 ARG61 PHE62 GLU63 LYS64 GLU65 GLY66 PHE67 GLU68 VAL69 ALA70 GLY71 THR72 LEU73 ASN74 ASP75 LEU76 LEU77 GLU78 LYS79 VAL80 ASP81 ILE82 ILE83 VAL84 ASP85 ALA86 THR87 PRO88 GLY89 GLY90 ILE91 GLY92 ALA93 LYS94 ASN95 LYS96 PRO97 LEU98 TYR99 GLU100 LYS101 ALA102 GLY103 VAL104 LYS105 ALA106 ILE107 PHE108 GLN109 GLY110 GLY111 GLU112 LYS113 ALA114 ASP115 VAL116 ALA117 GLU118 VAL119 SER120 PHE121 VAL122 ALA123 GLN124 ALA125 ASN126 TYR127 GLU128 ALA129 ALA130 LEU131 GLY132 LYS133 ASN134 TYR135 VAL136 ARG137 VAL138 VAL139 SER140 CYS141 ASN142 THR143 THR144 GLY145 LEU146 VAL147 ARG148 THR149 LEU150 SER151 ALA152 ILE153 ARG154 GLU155 TYR156 ALA157 ASP158 TYR159 VAL160 TYR161 ALA162 VAL163 MET164 ILE165 ARG166 ARG167 ALA168 ALA169 ASP170 PRO171 ASN172 ASP173 THR174 LYS175 ARG176 GLY177 PRO178 ILE179 ASN180 ALA181 ILE182 LYS183 PRO184 THR185 VAL186 GLU187 VAL188 PRO189 SER190 HIS191 HIS192 GLY193 PRO194 ASP195 VAL196 GLN197 THR198 VAL199 ILE200 PRO201 ILE202 ASN203 ILE204 GLU205 THR206 MET207 ALA208 PHE209 VAL210 VAL211 PRO212 THR213 THR214 LEU215 MET216 HIS217 VAL218 HIS219 SER220 VAL221 MET222 VAL223 GLU224 LEU225 LYS226 LYS227 PRO228 LEU229 THR230 LYS231 ASP232 ASP233 VAL234 ILE235 ASP236 ILE237 PHE238 GLU239 ASN240 THR241 THR242 ARG243 VAL244 LEU245 LEU246 PHE247 GLU248 LYS249 GLU250 LYS251 GLY252 PHE253 ASP254 SER255 THR256 ALA257 GLN258 ILE259 ILE260 GLU261 PHE262 ALA263 ARG264 ASP265 LEU266 HIS267 ARG268 GLU269 TRP270 ASN271 ASN272 LEU273 TYR274 GLU275 ILE276 ALA277 VAL278 TRP279 LYS280 GLU281 SER282 ILE283 ASN284 ILE285 LYS286 GLY287 ASN288 ARG289 LEU290 PHE291 TYR292 ILE293 GLN294 ALA295 VAL296 HIS297 GLN298 GLU299 SER300 ASP301 VAL302 ILE303 PRO304 GLU305 ASN306 ILE307 ASP308 ALA309 ILE310 ARG311 ALA312 MET313 PHE314 GLU315 LEU316 ALA317 ASP318 LYS319 TRP320 ASP321 SER322 ILE323 LYS324 LYS325 THR326 ASN327 LYS328 SER329 LEU330 GLY331 ILE332 LEU333 LYS334
Unit 2 LYS2 VAL3 LYS4 VAL5 GLY6 VAL7 ASN8 GLY9 TYR10 GLY11 THR12 ILE13 GLY14 LYS15 ARG16 VAL17 ALA18 TYR19 ALA20 VAL21 THR22 LYS23 GLN24 ASP25 ASP26 MET27 GLU28 LEU29 ILE30 GLY31 ILE32 THR33 LYS34 THR35 LYS36 PRO37 ASP38 PHE39 GLU40 ALA41 TYR42 ARG43 ALA44 LYS45 GLU46 LEU47 GLY48 ILE49 PRO50 VAL51 TYR52 ALA53 ALA54 SER55 GLU56 GLU57 PHE58 ILE59 PRO60 ARG61 PHE62 GLU63 LYS64 GLU65 GLY66 PHE67 GLU68 VAL69 ALA70 GLY71 THR72 LEU73 ASN74 ASP75 LEU76 LEU77 GLU78 LYS79 VAL80 ASP81 ILE82 ILE83 VAL84 ASP85 ALA86 THR87 PRO88 GLY89 GLY90 ILE91 GLY92 ALA93 LYS94 ASN95 LYS96 PRO97 LEU98 TYR99 GLU100 LYS101 ALA102 GLY103 VAL104 LYS105 ALA106 ILE107 PHE108 GLN109 GLY110 GLY111 GLU112 LYS113 ALA114 ASP115 VAL116 ALA117 GLU118 VAL119 SER120 PHE121 VAL122 ALA123 GLN124 ALA125 ASN126 TYR127 GLU128 ALA129 ALA130 LEU131 GLY132 LYS133 ASN134 TYR135 VAL136 ARG137 VAL138 VAL139 SER140 CYS141 ASN142 THR143 THR144 GLY145 LEU146 VAL147 ARG148 THR149 LEU150 SER151 ALA152 ILE153 ARG154 GLU155 TYR156 ALA157 ASP158 TYR159 VAL160 TYR161 ALA162 VAL163 MET164 ILE165 ARG166 ARG167 ALA168 ALA169 ASP170 PRO171 ASN172 ASP173 THR174 LYS175 ARG176 GLY177 PRO178 ILE179 ASN180 ALA181 ILE182 LYS183 PRO184 THR185 VAL186 GLU187 VAL188 PRO189 SER190 HIS191 HIS192 GLY193 PRO194 ASP195 VAL196 GLN197 THR198 VAL199 ILE200 PRO201 ILE202 ASN203 ILE204 GLU205 THR206 MET207 ALA208 PHE209 VAL210 VAL211 PRO212 THR213 THR214 LEU215 MET216 HIS217 VAL218 HIS219 SER220 VAL221 MET222 VAL223 GLU224 LEU225 LYS226 LYS227 PRO228 LEU229 THR230 LYS231 ASP232 ASP233 VAL234 ILE235 ASP236 ILE237 PHE238 GLU239 ASN240 THR241 THR242 ARG243 VAL244 LEU245 LEU246 PHE247 GLU248 LYS249 GLU250 LYS251 GLY252 PHE253 ASP254 SER255 THR256 ALA257 GLN258 ILE259 ILE260 GLU261 PHE262 ALA263 ARG264 ASP265 LEU266 HIS267 ARG268 GLU269 TRP270 ASN271 ASN272 LEU273 TYR274 GLU275 ILE276 ALA277 VAL278 TRP279 LYS280 GLU281 SER282 ILE283 ASN284 ILE285 LYS286 GLY287 ASN288 ARG289 LEU290 PHE291 TYR292 ILE293 GLN294 ALA295 VAL296 HIS297 GLN298 GLU299 SER300 ASP301 VAL302 ILE303 PRO304 GLU305 ASN306 ILE307 ASP308 ALA309 ILE310 ARG311 ALA312 MET313 PHE314 GLU315 LEU316 ALA317 ASP318 LYS319 TRP320 ASP321 SER322 ILE323 LYS324 LYS325 THR326 ASN327 LYS328 SER329 LEU330 GLY331 ILE332 LEU333 LYS334
Unit 3 LYS2 VAL3 LYS4 VAL5 GLY6 VAL7 ASN8 GLY9 TYR10 GLY11 THR12 ILE13 GLY14 LYS15 ARG16 VAL17 ALA18 TYR19 ALA20 VAL21 THR22 LYS23 GLN24 ASP25 ASP26 MET27 GLU28 LEU29 ILE30 GLY31 ILE32 THR33 LYS34 THR35 LYS36 PRO37 ASP38 PHE39 GLU40 ALA41 TYR42 ARG43 ALA44 LYS45 GLU46 LEU47 GLY48 ILE49 PRO50 VAL51 TYR52 ALA53 ALA54 SER55 GLU56 GLU57 PHE58 ILE59 PRO60 ARG61 PHE62 GLU63 LYS64 GLU65 GLY66 PHE67 GLU68 VAL69 ALA70 GLY71 THR72 LEU73 ASN74 ASP75 LEU76 LEU77 GLU78 LYS79 VAL80 ASP81 ILE82 ILE83 VAL84 ASP85 ALA86 THR87 PRO88 GLY89 GLY90 ILE91 GLY92 ALA93 LYS94 ASN95 LYS96 PRO97 LEU98 TYR99 GLU100 LYS101 ALA102 GLY103 VAL104 LYS105 ALA106 ILE107 PHE108 GLN109 GLY110 GLY111 GLU112 LYS113 ALA114 ASP115 VAL116 ALA117 GLU118 VAL119 SER120 PHE121 VAL122 ALA123 GLN124 ALA125 ASN126 TYR127 GLU128 ALA129 ALA130 LEU131 GLY132 LYS133 ASN134 TYR135 VAL136 ARG137 VAL138 VAL139 SER140 CYS141 ASN142 THR143 THR144 GLY145 LEU146 VAL147 ARG148 THR149 LEU150 SER151 ALA152 ILE153 ARG154 GLU155 TYR156 ALA157 ASP158 TYR159 VAL160 TYR161 ALA162 VAL163 MET164 ILE165 ARG166 ARG167 ALA168 ALA169 ASP170 PRO171 ASN172 ASP173 THR174 LYS175 ARG176 GLY177 PRO178 ILE179 ASN180 ALA181 ILE182 LYS183 PRO184 THR185 VAL186 GLU187 VAL188 PRO189 SER190 HIS191 HIS192 GLY193 PRO194 ASP195 VAL196 GLN197 THR198 VAL199 ILE200 PRO201 ILE202 ASN203 ILE204 GLU205 THR206 MET207 ALA208 PHE209 VAL210 VAL211 PRO212 THR213 THR214 LEU215 MET216 HIS217 VAL218 HIS219 SER220 VAL221 MET222 VAL223 GLU224 LEU225 LYS226 LYS227 PRO228 LEU229 THR230 LYS231 ASP232 ASP233 VAL234 ILE235 ASP236 ILE237 PHE238 GLU239 ASN240 THR241 THR242 ARG243 VAL244 LEU245 LEU246 PHE247 GLU248 LYS249 GLU250 LYS251 GLY252 PHE253 ASP254 SER255 THR256 ALA257 GLN258 ILE259 ILE260 GLU261 PHE262 ALA263 ARG264 ASP265 LEU266 HIS267 ARG268 GLU269 TRP270 ASN271 ASN272 LEU273 TYR274 GLU275 ILE276 ALA277 VAL278 TRP279 LYS280 GLU281 SER282 ILE283 ASN284 ILE285 LYS286 GLY287 ASN288 ARG289 LEU290 PHE291 TYR292 ILE293 GLN294 ALA295 VAL296 HIS297 GLN298 GLU299 SER300 ASP301 VAL302 ILE303 PRO304 GLU305 ASN306 ILE307 ASP308 ALA309 ILE310 ARG311 ALA312 MET313 PHE314 GLU315 LEU316 ALA317 ASP318 LYS319 TRP320 ASP321 SER322 ILE323 LYS324 LYS325 THR326 ASN327 LYS328 SER329 LEU330 GLY331 ILE332 LEU333 LYS334
Unit 4 LYS2 VAL3 LYS4 VAL5 GLY6 VAL7 ASN8 GLY9 TYR10 GLY11 THR12 ILE13 GLY14 LYS15 ARG16 VAL17 ALA18 TYR19 ALA20 VAL21 THR22 LYS23 GLN24 ASP25 ASP26 MET27 GLU28 LEU29 ILE30 GLY31 ILE32 THR33 LYS34 THR35 LYS36 PRO37 ASP38 PHE39 GLU40 ALA41 TYR42 ARG43 ALA44 LYS45 GLU46 LEU47 GLY48 ILE49 PRO50 VAL51 TYR52 ALA53 ALA54 SER55 GLU56 GLU57 PHE58 ILE59 PRO60 ARG61 PHE62 GLU63 LYS64 GLU65 GLY66 PHE67 GLU68 VAL69 ALA70 GLY71 THR72 LEU73 ASN74 ASP75 LEU76 LEU77 GLU78 LYS79 VAL80 ASP81 ILE82 ILE83 VAL84 ASP85 ALA86 THR87 PRO88 GLY89 GLY90 ILE91 GLY92 ALA93 LYS94 ASN95 LYS96 PRO97 LEU98 TYR99 GLU100 LYS101 ALA102 GLY103 VAL104 LYS105 ALA106 ILE107 PHE108 GLN109 GLY110 GLY111 GLU112 LYS113 ALA114 ASP115 VAL116 ALA117 GLU118 VAL119 SER120 PHE121 VAL122 ALA123 GLN124 ALA125 ASN126 TYR127 GLU128 ALA129 ALA130 LEU131 GLY132 LYS133 ASN134 TYR135 VAL136 ARG137 VAL138 VAL139 SER140 CYS141 ASN142 THR143 THR144 GLY145 LEU146 VAL147 ARG148 THR149 LEU150 SER151 ALA152 ILE153 ARG154 GLU155 TYR156 ALA157 ASP158 TYR159 VAL160 TYR161 ALA162 VAL163 MET164 ILE165 ARG166 ARG167 ALA168 ALA169 ASP170 PRO171 ASN172 ASP173 THR174 LYS175 ARG176 GLY177 PRO178 ILE179 ASN180 ALA181 ILE182 LYS183 PRO184 THR185 VAL186 GLU187 VAL188 PRO189 SER190 HIS191 HIS192 GLY193 PRO194 ASP195 VAL196 GLN197 THR198 VAL199 ILE200 PRO201 ILE202 ASN203 ILE204 GLU205 THR206 MET207 ALA208 PHE209 VAL210 VAL211 PRO212 THR213 THR214 LEU215 MET216 HIS217 VAL218 HIS219 SER220 VAL221 MET222 VAL223 GLU224 LEU225 LYS226 LYS227 PRO228 LEU229 THR230 LYS231 ASP232 ASP233 VAL234 ILE235 ASP236 ILE237 PHE238 GLU239 ASN240 THR241 THR242 ARG243 VAL244 LEU245 LEU246 PHE247 GLU248 LYS249 GLU250 LYS251 GLY252 PHE253 ASP254 SER255 THR256 ALA257 GLN258 ILE259 ILE260 GLU261 PHE262 ALA263 ARG264 ASP265 LEU266 HIS267 ARG268 GLU269 TRP270 ASN271 ASN272 LEU273 TYR274 GLU275 ILE276 ALA277 VAL278 TRP279 LYS280 GLU281 SER282 ILE283 ASN284 ILE285 LYS286 GLY287 ASN288 ARG289 LEU290 PHE291 TYR292 ILE293 GLN294 ALA295 VAL296 HIS297 GLN298 GLU299 SER300 ASP301 VAL302 ILE303 PRO304 GLU305 ASN306 ILE307 ASP308 ALA309 ILE310 ARG311 ALA312 MET313 PHE314 GLU315 LEU316 ALA317 ASP318 LYS319 TRP320 ASP321 SER322 ILE323 LYS324 LYS325 THR326 ASN327 LYS328 SER329 LEU330 GLY331 ILE332 LEU333
Ligands
Unit 5 NAD501 PO4601 PO4602
Unit 6 NAD502 PO4603
Unit 7 NAD503 PO4604
Unit 8 NAD504 PO4605
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany