2CVC - JenaLib

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:66 , THR A:70 , VAL A:73 , CYS A:80 , CYS A:83 , HIS A:84 , LEU A:93 , LYS A:94 , PHE A:95 , ARG A:97 , TYR A:110 , HIS A:222 , HEM A:1002 , HEM A:1007 , HOH A:1172 , HOH A:1470	BINDING SITE FOR RESIDUE HEM A 1001
02	AC2	SOFTWARE	ILE A:48 , VAL A:62 , PHE A:64 , GLN A:68 , HIS A:69 , PHE A:95 , CYS A:114 , CYS A:117 , HIS A:118 , LEU A:121 , LYS A:127 , GLY A:129 , PRO A:130 , HEM A:1001 , HOH A:1098 , HOH A:1158 , HOH A:1267 , HOH A:1268	BINDING SITE FOR RESIDUE HEM A 1002
03	AC3	SOFTWARE	ILE A:48 , GLY A:49 , ALA A:50 , MET A:51 , LEU A:57 , ASP A:58 , LEU A:59 , LYS A:107 , TYR A:110 , HIS A:111 , GLN A:131 , ASP A:132 , CYS A:135 , CYS A:138 , HIS A:139 , GLN A:517 , HOH A:1039	BINDING SITE FOR RESIDUE HEM A 1003
04	AC4	SOFTWARE	GLY A:153 , PHE A:154 , HIS A:159 , HIS A:162 , ASN A:177 , CYS A:178 , CYS A:181 , HIS A:182 , GLU A:199 , SER A:201 , ARG A:203 , LEU A:265 , ASP A:307 , CYS A:308 , ARG A:309 , ILE A:316 , HEM A:1006	BINDING SITE FOR RESIDUE HEM A 1004
05	AC5	SOFTWARE	LYS A:90 , CYS A:181 , HIS A:183 , LEU A:192 , SER A:201 , CYS A:202 , CYS A:205 , HIS A:206 , LYS A:213 , ARG A:214 , ALA A:224	BINDING SITE FOR RESIDUE HEM A 1005
06	AC6	SOFTWARE	PHE A:154 , ARG A:161 , HIS A:162 , SER A:165 , CYS A:181 , ALA A:224 , CYS A:225 , CYS A:228 , HIS A:229 , GLU A:238 , THR A:239 , GLY A:240 , PRO A:241 , PHE A:256 , HEM A:1004 , HOH A:1081 , HOH A:1159 , HOH A:1296 , HOH A:1297 , HOH A:1298 , HOH A:1373 , HOH A:1439	BINDING SITE FOR RESIDUE HEM A 1006
07	AC7	SOFTWARE	HIS A:66 , TRP A:149 , GLU A:151 , ILE A:152 , ARG A:203 , ASP A:218 , ALA A:221 , HIS A:222 , ILE A:226 , VAL A:242 , ASN A:243 , CYS A:244 , CYS A:247 , HIS A:248 , HEM A:1001	BINDING SITE FOR RESIDUE HEM A 1007
08	AC8	SOFTWARE	LEU A:265 , GLN A:269 , PRO A:270 , PHE A:296 , HIS A:298 , GLU A:302 , ALA A:305 , ASP A:307 , CYS A:308 , CYS A:311 , HIS A:312 , ILE A:316 , THR A:318 , CYS A:319 , THR A:320 , HEM A:1010 , HOH A:1207 , HOH A:1303	BINDING SITE FOR RESIDUE HEM A 1008
09	AC9	SOFTWARE	CYS A:311 , HIS A:312 , HIS A:313 , VAL A:314 , ARG A:315 , THR A:318 , CYS A:319 , CYS A:322 , HIS A:323 , ASP A:330 , SER A:331 , ALA A:339 , GLN A:342 , SER A:345 , ARG A:347 , HOH A:1143	BINDING SITE FOR RESIDUE HEM A 1009
10	BC1	SOFTWARE	ILE A:275 , PHE A:296 , ASP A:297 , ALA A:300 , HIS A:301 , LYS A:304 , THR A:310 , CYS A:311 , MET A:346 , SER A:348 , CYS A:349 , CYS A:352 , HIS A:353 , ARG A:356 , ARG A:417 , LEU A:465 , THR A:468 , HEM A:1008 , HEM A:1012 , HOH A:1046 , HOH A:1117 , HOH A:1206 , HOH A:1393	BINDING SITE FOR RESIDUE HEM A 1010
11	BC2	SOFTWARE	VAL A:357 , THR A:361 , CYS A:362 , CYS A:365 , HIS A:366 , ILE A:369 , PRO A:371 , THR A:372 , GLN A:377 , ASP A:463 , PHE A:469 , HIS A:470 , THR A:475 , LEU A:476 , GLN A:478 , GLY A:479 , HOH A:1075 , HOH A:1428	BINDING SITE FOR RESIDUE HEM A 1011
12	BC3	SOFTWARE	GLU A:261 , ILE A:275 , LEU A:276 , PRO A:277 , GLY A:289 , THR A:290 , MET A:291 , LYS A:292 , LEU A:336 , GLU A:337 , MET A:340 , HIS A:341 , CYS A:349 , LYS A:373 , CYS A:378 , CYS A:381 , HIS A:382 , HEM A:1010 , HOH A:1083 , HOH A:1162	BINDING SITE FOR RESIDUE HEM A 1012
13	BC4	SOFTWARE	ILE A:429 , PHE A:447 , HIS A:449 , CYS A:477 , CYS A:480 , HIS A:481 , SER A:487 , LEU A:488 , PRO A:490 , LYS A:492 , CYS A:493 , TYR A:515 , HEM A:1015 , HOH A:1035	BINDING SITE FOR RESIDUE HEM A 1013
14	BC5	SOFTWARE	CYS A:480 , HIS A:482 , ASN A:483 , LYS A:492 , CYS A:493 , SER A:495 , CYS A:496 , HIS A:497 , ASP A:507 , ARG A:508 , PRO A:509 , ALA A:514 , GLN A:517 , GLN A:518 , HOH A:1070 , HOH A:1224 , HOH A:1429	BINDING SITE FOR RESIDUE HEM A 1014
15	BC6	SOFTWARE	ILE A:435 , PHE A:447 , LYS A:451 , ILE A:452 , THR A:455 , GLN A:518 , CYS A:519 , CYS A:522 , HIS A:523 , ILE A:528 , PRO A:531 , HEM A:1013 , HEM A:1016	BINDING SITE FOR RESIDUE HEM A 1015
16	BC7	SOFTWARE	LYS A:123 , GLN A:131 , ILE A:435 , GLY A:436 , SER A:437 , ILE A:438 , ALA A:439 , LYS A:440 , GLU A:441 , TYR A:442 , LYS A:512 , HIS A:516 , CYS A:519 , MET A:520 , ASN A:533 , CYS A:536 , CYS A:539 , HIS A:540 , HEM A:1015 , HOH A:1137 , HOH A:1226	BINDING SITE FOR RESIDUE HEM A 1016

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:500
 aligned with HMWC_DESVH | P24092 from UniProtKB/Swiss-Prot  Length:545

    Alignment length:506
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539      
           HMWC_DESVH    40 EKRADLIEIGAMERFGKLDLPKVAFRHDQHTTAVTGMGKDCAACHKSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQCMGCHDRMKIEKPANTACVDCHKERAK 545
               SCOP domains d2cvca_ A: 16-heme cytochrome c HmcA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2cvcA01 A:40-141 Cytochrome C3                                                                        -------2cvcA02 A:149-257 Cytochrome C3                                                                              -------------2cvcA03 A:271-345,A:381-419 Cytochrome C3                                  2cvcA04 A:346-380,A:420-545        2cvcA03 A:271-345,A:381-419            2cvcA04 A:346-380,A:420-545 Cytochrome C3                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..eeeehhhhhhh......eeeehhhhhhhhhhh..hhhhh..ee..ee..........hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh......ee.......hhhhhhhhhh............hhhhh..eee....eee.......hhhhh..........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.................eeee..................eeeehhhhhhhh......................hhhhh..hhhhhhhh.....hhhhhhhhhh.hhhhhhhhh......hhhhhh.........hhhhhh.......hhhhhhhhhhhhhhhh.......hhhhh...eee.........eeehhhhhhhhhhhhhh.hhhhhhhh....hhhhhh...........hhhhh....------...hhhhhhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------MULTIHEME_CYTC  PDB: A:75-545 UniProt: 75-545                                                                                                                                                                                                                                                                                                                                                                                                                                           PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cvc A  40 EKRADLIEIGAMERFGKLDLPKVAFRHDQHTTAVTGMGKDCAACHKSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVPGKDAPREMKGTMKPVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQPTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIAKEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKP------DRPGLKAAYHQQCMGCHDRMKIEKPANTACVDCHKERAK 545
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499|      509       519       529       539      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      500    507

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (HMWC_DESVH | P24092)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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	Cis Peptide Bonds
		Lys A:499 - Pro A:500	[ RasMol ]
		Lys A:530 - Pro A:531	[ RasMol ]
		Pro A:284 - Arg A:285	[ RasMol ]

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	2cvc
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 16)

Sites (16, 16)