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(-) Description

Title :  SOLUTION STRUCTURE OF THE ZF-C3HC4 DOMAIN OF HUMAN KIAA1865
 
Authors :  K. Inoue, K. Saitoh, F. Hayashi, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  20 May 05  (Deposition) - 20 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-C3Hc4 Domain, Protein C14Orf4, My039 Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Inoue, K. Saitoh, F. Hayashi, T. Kigawa, S. Yokoyama
Solution Structure Of The Zf-C3Hc4 Domain Of Human Kiaa1865
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN C14ORF4
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030609-19
    Expression System Vector Type: PLASMID
    Fragment: ZF-C3HC4 DOMAIN
    Gene: KAZUSA CDNA FJ14303
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS
    Synonym: MY039 PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , CYS A:42 , CYS A:45BINDING SITE FOR RESIDUE ZN A 200
2AC2SOFTWARECYS A:33 , HIS A:39 , CYS A:61 , CYS A:67BINDING SITE FOR RESIDUE ZN A 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CS3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CS3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CS3)

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002386471ENSE00001401427chr14:77495034-774908884147I2BPL_HUMAN1-109610961A:1-93 (gaps)148

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:93
 aligned with I2BPL_HUMAN | Q9H1B7 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:148
                                   652       662       672       682       692       702       712       722       732       742       752       762       772       782        
          I2BPL_HUMAN   643 GSSVHSTTASARRNSSSPVSPASVPGQRRLASRNGDLNLQVAPPPPSAHPGMDQVHPQNIPDSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGDVKV 790
               SCOP domains --------------------------------------------------------------d2cs3a1 A:8-87 Protein c14orf4 (KIAA1865)                                       ------ SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-----------...--------.------------------------------------.......................ee.......eehhhhhhhhhhhhhh.......................hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:1-93 (gaps) UniProt: 1-1096 [INCOMPLETE]                                                                                            Transcript 1
                 2cs3 A   1 GSS-----------GSS--------G------------------------------------SPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATILSGPSSG  93
                              |      -    | |  -     |   -         -         -         -  |     15        25        35        45        55        65        75        85        
                              3           4 6        7                                    8
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CS3)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (I2BPL_HUMAN | Q9H1B7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0046543    development of secondary female sexual characteristics    The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
cellular component
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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        I2BPL_HUMAN | Q9H1B7: 2b9g

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