2B9G - JenaLib

Title :   IN SILICO ANALYSIS IDENTIFIES A NOVEL C3HC4 RING FINGER DOMAIN OF AN E3 UBIQUITIN-PROTEIN LIGASE LOCATED AT THE C-TERMINUS OF A POLYGLUTAMINE-CONTAINING PROTEIN (AJ277365, AF525300, AY879229)

Authors :   T. Scior

Date :   11 Oct 05 (Deposition) - 29 Nov 05 (Release) - 29 Nov 05 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A,_^#
( ^#: chains that contain no standard or modified protein/DNA/RNA residue)

Keywords :   C3Hc4-Ring Finger Domain Of E3 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Scior, F. Luna, C. Mastronardi, C. H. Roth, S. R. Ojeda, W. Koch, J. F. Sanchez-Ruiz
In Silico Analysis Identifies A Novel C3Hc4 Ring Fi Domain Of An E3 Ubiquitin-Protein Ligase Located At C-Terminus Of A Polyglutamine-Containing Protein, Aj277365, Af525300, Ay879229
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (1, 1)

Sequences/Alignments

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:64
 aligned with I2BPL_HUMAN | Q9H1B7 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:64
                                   717       727       737       747       757       767    
          I2BPL_HUMAN   708 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNV 771
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhh.....hhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:708-771 UniProt: 1-1096 [INCOMPLETE]            Transcript 1
                 2b9g A 708 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNV 771
                                   717       727       737       747       757       767

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Theoretical Model(hide GO term definitions)

Chain A (I2BPL_HUMAN | Q9H1B7)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0046543	development of secondary female sexual characteristics	The process whose specific outcome is the progression of the secondary female sexual characteristics over time, from their formation to the mature structures. In female humans, these include growth of axillary and pubic hair, breast development and menstrual periods. Their development occurs in response to sex hormone secretion.
	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0045944	positive regulation of transcription from RNA polymerase II promoter	Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
cellular component
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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		Ser A:735 - His A:736	[ RasMol ]

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