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(-) Description

Title :  STRUCTURE OF B.SUBTILIS LRPC
 
Authors :  P. Thaw, J. B. Rafferty
Date :  24 Feb 06  (Deposition) - 28 Mar 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Transcription, Lrpc, Transcriptional Regulation, Dna Binding, Ffrp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Thaw, S. E. Sedelnikova, T. Muranova, S. Wiese, S. Ayora, J. C. Alonso, A. B. Brinkman, J. Akerboom, J. Van Der Oost, J. B. Rafferty
Structural Insight Into Gene Transcriptional Regulation And Effector Binding By The Lrp/Asnc Family.
Nucleic Acids Res. V. 34 1439 2006
PubMed-ID: 16528101  |  Reference-DOI: 10.1093/NAR/GKL009

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR LRPC
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET3B
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2CFX)

(-) Sites  (0, 0)

(no "Site" information available for 2CFX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CFX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CFX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CFX)

(-) PROSITE Motifs  (1, 8)

Asymmetric/Biological Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_ASNC_2PS50956 AsnC-type HTH domain profile.LRPC_BACSU3-64
 
 
 
 
 
 
 		  8A:3-64
B:3-64
C:3-64
D:3-64
E:3-64
F:3-64
G:3-64
H:3-64

(-) Exons   (0, 0)

(no "Exon" information available for 2CFX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxa1 A:1-63 Transcriptional regulator LrpC                  d2cfxa2 A:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeeee....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: A:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx A   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain B from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxb1 B:1-63 Transcriptional regulator LrpC                  d2cfxb2 B:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhh..eeeeeeee........eeeeeeeee...hhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: B:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx B   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain C from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxc1 C:1-63 Transcriptional regulator LrpC                  d2cfxc2 C:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: C:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx C   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain D from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxd1 D:1-63 Transcriptional regulator LrpC                  d2cfxd2 D:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee........eeeeeeeee...hhhhhhhhhh....eeeeeeee....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: D:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx D   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain E from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxe1 E:1-63 Transcriptional regulator LrpC                  d2cfxe2 E:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: E:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx E   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain F from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxf1 F:1-63 Transcriptional regulator LrpC                  d2cfxf2 F:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhhh..eeeeeeee........eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: F:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx F   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain G from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxg1 G:1-63 Transcriptional regulator LrpC                  d2cfxg2 G:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee...hhhhhhhhhhhh..eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: G:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx G   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140


Chain H from PDB  Type:PROTEIN  Length:140
 aligned with LRPC_BACSU | P96582 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           LRPC_BACSU     1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
               SCOP domains d2cfxh1 H:1-63 Transcriptional regulator LrpC                  d2cfxh2 H:64-140 Transcriptional regulator LrpC                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee........eeeeeeeee...hhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhhh..eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --HTH_ASNC_2  PDB: H:3-64 UniProt: 3-64                         ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2cfx H   1 MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTK 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CFX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CFX)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (LRPC_BACSU | P96582)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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