2C7G - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   FPRA FROM MYCOBACTERIUM TUBERCULOSIS: HIS57GLN MUTANT

Authors :   A. Pennati, A. Razeto, M. De Rosa, V. Pandini, M. A. Vanoni, A. Aliverti, A. Mattevi, A. Coda, G. Zanetti

Date :   24 Nov 05 (Deposition) - 26 Jul 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Fad, Flavoprotein, Nadp, Oxidoreductase, Tuberculosis, Nap+ Derivative (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Pennati, A. Razeto, M. De Rosa, V. Pandini, M. A. Vanoni, A. Mattevi, A. Coda, A. Aliverti, G. Zanetti
Role Of The His57-Glu214 Ionic Couple Located In The Active Site Of Mycobacterium Tuberculosis Fpra.
Biochemistry V. 45 8712 2006
PubMed-ID: 16846214 | Reference-DOI: 10.1021/BI060369M

Molecule 1 - NADPH-FERREDOXIN REDUCTASE FPRA
	Chains	:	A
	EC Number	:	1.18.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Mutation	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Synonym	:	FPRA, NFR

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 3)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	NA	1	Ligand/Ion	SODIUM ION
3	ODP	1	Ligand/Ion	4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	NA	-1	Ligand/Ion	SODIUM ION
3	ODP	2	Ligand/Ion	4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:161 , ODP A:502 , HOH A:2269 , HOH A:2272 , HOH A:2612	BINDING SITE FOR RESIDUE NA A 503
2	AC2	SOFTWARE	GLY A:10 , GLY A:12 , PRO A:13 , SER A:14 , GLU A:40 , MET A:41 , GLY A:47 , LEU A:48 , GLY A:52 , VAL A:53 , ILE A:60 , VAL A:82 , VAL A:84 , ALA A:103 , VAL A:104 , GLY A:105 , GLN A:107 , TYR A:324 , GLY A:358 , TRP A:359 , GLY A:366 , VAL A:367 , ILE A:368 , ASN A:371 , ODP A:502 , HOH A:2069 , HOH A:2177 , HOH A:2182 , HOH A:2476 , HOH A:2514 , HOH A:2609 , HOH A:2610 , HOH A:2611 , HOH A:2612 , HOH A:2613 , HOH A:2614	BINDING SITE FOR RESIDUE FAD A 501
3	AC3	SOFTWARE	ARG A:110 , ILE A:153 , ASN A:155 , GLY A:156 , ASN A:157 , VAL A:158 , ARG A:199 , ARG A:200 , ALA A:206 , GLU A:211 , SER A:321 , VAL A:322 , TRP A:359 , PRO A:364 , THR A:365 , GLY A:366 , VAL A:367 , FAD A:501 , NA A:503 , HOH A:2193 , HOH A:2196 , HOH A:2467 , HOH A:2468 , HOH A:2615 , HOH A:2616 , HOH A:2617 , HOH A:2618 , HOH A:2619 , HOH A:2620 , HOH A:2621 , HOH A:2622 , HOH A:2623 , HOH A:2625 , HOH A:2626 , HOH A:2627 , HOH A:2628 , HOH A:2629 , HOH A:2630	BINDING SITE FOR RESIDUE ODP A 502

(no "SS Bond" information available for 2C7G)

(no "Cis Peptide Bond" information available for 2C7G)

(no "SAP(SNP)/Variant" information available for 2C7G)

(no "PROSITE Motif" information available for 2C7G)

(no "Exon" information available for 2C7G)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:453
 aligned with FPRA_MYCTO | P9WIQ2 from UniProtKB/Swiss-Prot  Length:456

    Alignment length:455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451     
           FPRA_MYCTO     2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGLG 456
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2c7gA01 A:3-46,A:64-108,A:325-454           2c7gA02          2c7gA01 A:3-46,A:64-108,A:325-454            2c7gA02 A:47-63,A:109-324  [code=3.50.50.60, no name defined]                                                                                                                                                           2c7gA01 A:3-46,A:64-108,A:325-454 NAD(P)-binding Rossmann-like Domain                                                             -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhh....hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.eeee.....ee............eeehhhhhhhhh.hhhhh.........eeeee..hhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeee...hhhhh..hhhhhhhhhhh...eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........eeeee..eeeeeee......eeeeeeeeeee.....eeeeeeeeeeeee..eeee...ee.................ee..ee.....eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......--hhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7g A   2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSF--DHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGLG 456
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391      |401       411       421       431       441       451     
                                                                                                                                                                                                                                                                                                                                                                                                                                      398  |                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                         401

Chain A from PDB  Type:PROTEIN  Length:453
 aligned with FPRA_MYCTU | P9WIQ3 from UniProtKB/Swiss-Prot  Length:456

    Alignment length:455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451     
           FPRA_MYCTU     2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGLG 456
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2c7gA01 A:3-46,A:64-108,A:325-454           2c7gA02          2c7gA01 A:3-46,A:64-108,A:325-454            2c7gA02 A:47-63,A:109-324  [code=3.50.50.60, no name defined]                                                                                                                                                           2c7gA01 A:3-46,A:64-108,A:325-454 NAD(P)-binding Rossmann-like Domain                                                             -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhh....hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh.eeee.....ee............eeehhhhhhhhh.hhhhh.........eeeee..hhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....eeeee...hhhhh..hhhhhhhhhhh...eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhh........eeeee..eeeeeee......eeeeeeeeeee.....eeeeeeeeeeeee..eeee...ee.................ee..ee.....eee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......--hhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c7g A   2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDQPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSF--DHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGLG 456
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391      |401       411       421       431       441       451     
                                                                                                                                                                                                                                                                                                                                                                                                                                      398  |                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                         401

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2C7G)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Mycobacterium tuberculosis. Organism_taxid: 1773. (15)

2c7gA01

A:3-46,A:64-108,A:325-454

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Mycobacterium tuberculosis. Organism_taxid: 1773. (3)

2c7gA02

A:47-63,A:109-324

(no "Pfam Domain" information available for 2C7G)

Asymmetric Unit(hide GO term definitions)

Chain A (FPRA_MYCTO | P9WIQ2)

molecular function
	GO:0004324	ferredoxin-NADP+ reductase activity	Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain A (FPRA_MYCTU | P9WIQ3)

molecular function
	GO:0070401	NADP+ binding	Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0008860	ferredoxin-NAD+ reductase activity	Catalysis of the reaction: reduced ferredoxin + NAD+ = oxidized ferredoxin + NADH + H+.
	GO:0004324	ferredoxin-NADP+ reductase activity	Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2c7g)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
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Access by PDB/NDB ID
	2c7g
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		Orientation in Membranes	:	OPM
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	FPRA_MYCTO \| P9WIQ2
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	FPRA_MYCTU \| P9WIQ3
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	1.18.1.2
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		Disease Information	:	OMIM

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		Interatomic Contacts of Structural Units	:	CSU
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	FPRA_MYCTO \| P9WIQ2
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	FPRA_MYCTU \| P9WIQ3
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UniProtKB/Swiss-Prot
	FPRA_MYCTO \| P9WIQ2	:	1lqt 1lqu
	FPRA_MYCTU \| P9WIQ3	:	1lqt 1lqu

1lqt	A COVALENT MODIFICATION OF NADP+ REVEALED BY THE ATOMICRESOLUTION STRUCTURE OF FPRA, A MYCOBACTERIUM TUBERCULOSISOXIDOREDUCTASE
1lqu	MYCOBACTERIUM TUBERCULOSIS FPRA IN COMPLEX WITH NADPH

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (8, 11)

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