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(-) Description

Title :  SHIGA-LIKE TOXIN 1 B SUBUNIT COMPLEXED WITH A BIVALENT INHIBITOR
 
Authors :  R. B. Dodd, R. J. Read
Date :  26 Oct 05  (Deposition) - 27 Nov 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.94
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Bacterial Exotoxin, Gb3 Binding Activity, Bivalent Ligand, Protein-Carbohydrate Recognition, Ob Fold, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. B. Dodd, R. J. Read
Extensive Cross-Linking Of The Shiga-Like Toxin 1 B Subunit By A Bivalent Ligand
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHIGA-LIKE TOXIN 1 B SUBUNIT
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RECEPTOR-BINDING DOMAIN, RESIDUES 21-89
    Organism Scientific: BACTERIOPHAGE H30
    Organism Taxid: 12371
    Other Details: ISOLATED FROM E. COLI O157 H7
    Synonym: VEROTOXIN 1 SUBUNIT B

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 64)

Asymmetric Unit (6, 64)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2GAL12Ligand/IonBETA-D-GALACTOSE
3GLA29Ligand/IonALPHA D-GALACTOSE
4GLC10Ligand/IonALPHA-D-GLUCOSE
5S108Ligand/IonDIETHYL PROPANE-1,3-DIYLBISCARBAMATE
6SO41Ligand/IonSULFATE ION
Biological Unit 1 (5, 38)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2GAL9Ligand/IonBETA-D-GALACTOSE
3GLA16Ligand/IonALPHA D-GALACTOSE
4GLC7Ligand/IonALPHA-D-GLUCOSE
5S104Ligand/IonDIETHYL PROPANE-1,3-DIYLBISCARBAMATE
6SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (6, 26)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2GAL3Ligand/IonBETA-D-GALACTOSE
3GLA13Ligand/IonALPHA D-GALACTOSE
4GLC3Ligand/IonALPHA-D-GLUCOSE
5S104Ligand/IonDIETHYL PROPANE-1,3-DIYLBISCARBAMATE
6SO41Ligand/IonSULFATE ION

(-) Sites  (64, 64)

Asymmetric Unit (64, 64)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:32 , ARG A:33 , TRP A:34 , ASN A:35 , GAL A:1071 , ASP B:18 , ASP F:16 , ARG J:33 , GLA J:1073BINDING SITE FOR RESIDUE GLA A1070
02AC2SOFTWARETRP A:34 , GLA A:1070 , GLC A:1072 , S10 A:1076 , ASP F:16 , GAL J:1074 , GLC J:1075BINDING SITE FOR RESIDUE GAL A1071
03AC3SOFTWAREGAL A:1071 , S10 A:1076 , ASP F:16 , THR J:1 , GLU J:65BINDING SITE FOR RESIDUE GLC A1072
04AC4SOFTWAREPHE A:30 , THR A:31 , ASN A:32 , ARG A:33 , GLY A:62 , PHE A:63 , GAL A:1074 , ASP B:16 , ASN J:32 , GLA J:1070 , GAL J:1071BINDING SITE FOR RESIDUE GLA A1073
05AC5SOFTWARETHR A:1 , THR A:54 , ASN A:55 , GLY A:62 , GLA A:1073 , GLC A:1075 , GAL J:1071 , S10 J:1076BINDING SITE FOR RESIDUE GAL A1074
06AC6SOFTWAREASN A:55 , GAL A:1074 , GLA I:1070 , ASP J:18 , TRP J:34 , GAL J:1071 , S10 J:1076BINDING SITE FOR RESIDUE GLC A1075
07AC7SOFTWAREASN B:32 , ARG B:33 , TRP B:34 , ASN B:35 , GAL B:71 , TYR C:14 , ASP C:18 , TRP C:34BINDING SITE FOR RESIDUE GLA B 70
08AC8SOFTWARES10 A:1076 , TRP B:34 , GLA B:70 , GLC B:72 , ASP F:17BINDING SITE FOR RESIDUE GAL B 71
09AC9SOFTWARES10 A:1076 , GAL B:71 , ASN F:15 , ASP F:17 , THR F:19 , PHE F:30BINDING SITE FOR RESIDUE GLC B 72
10BC1SOFTWARETHR B:31 , ASN B:32 , ARG B:33 , GLY B:62 , PHE B:63 , GAL B:1073 , ASP C:16BINDING SITE FOR RESIDUE GLA B1072
11BC2SOFTWARETHR B:54 , ASN B:55 , GLY B:62 , GLA B:1072 , GLC B:1074BINDING SITE FOR RESIDUE GAL B1073
12BC3SOFTWAREASN B:55 , GAL B:1073BINDING SITE FOR RESIDUE GLC B1074
13BC4SOFTWAREASN B:15 , ASP B:17 , THR B:19 , PHE B:30 , GAL B:1077 , S10 F:1073BINDING SITE FOR RESIDUE GLC B1075
14BC5SOFTWAREGAL B:1077 , ARG F:33 , TRP F:34 , ASN F:35 , TYR G:14 , ASP G:18BINDING SITE FOR RESIDUE GLA B1076
15BC6SOFTWAREASP B:17 , GLC B:1075 , GLA B:1076 , TRP F:34 , S10 F:1073BINDING SITE FOR RESIDUE GAL B1077
16BC7SOFTWAREASN C:32 , ARG C:33 , TRP C:34 , ASN C:35BINDING SITE FOR RESIDUE GLA C1070
17BC8SOFTWARETHR C:31 , ASN C:32 , ARG C:33 , PHE C:63 , SER C:64 , GLA C:1072 , ASP D:16BINDING SITE FOR RESIDUE GLA C1071
18BC9SOFTWARETHR C:54 , ASN C:55 , GLY C:62 , GLA C:1071 , S10 C:1073BINDING SITE FOR RESIDUE GLA C1072
19CC1SOFTWAREGAL C:1075 , PHE F:30 , THR F:31 , ASN F:32 , ARG F:33 , GLY F:62 , PHE F:63 , SER F:64 , ASP G:16BINDING SITE FOR RESIDUE GLA C1074
20CC2SOFTWARES10 C:1073 , GLA C:1074 , GLC C:1076 , THR F:1 , THR F:54 , ASN F:55BINDING SITE FOR RESIDUE GAL C1075
21CC3SOFTWARES10 C:1073 , GAL C:1075 , ASN F:55BINDING SITE FOR RESIDUE GLC C1076
22CC4SOFTWAREASN D:32 , ARG D:33 , TRP D:34 , ASN D:35 , GLA D:1071 , ASP E:18BINDING SITE FOR RESIDUE GLA D1070
23CC5SOFTWARETRP D:34 , GLA D:1070BINDING SITE FOR RESIDUE GLA D1071
24CC6SOFTWARETHR D:31 , ASN D:32 , ARG D:33 , GLY D:62 , PHE D:63 , SER D:64 , GAL D:1073 , GLA D:1076 , GAL D:1077 , ASP E:16BINDING SITE FOR RESIDUE GLA D1072
25CC7SOFTWARETHR D:54 , ASN D:55 , GLY D:62 , GLA D:1072 , BGC D:1074 , S10 D:1075 , GLA D:1076 , GAL D:1077 , BGC D:1078BINDING SITE FOR RESIDUE GAL D1073
26CC8SOFTWAREGAL D:1073 , S10 D:1075 , GAL D:1077 , BGC D:1078BINDING SITE FOR RESIDUE BGC D1074
27CC9SOFTWARETHR D:31 , ASN D:32 , ARG D:33 , GLY D:62 , PHE D:63 , SER D:64 , GLA D:1072 , GAL D:1073 , GAL D:1077 , ASP E:16BINDING SITE FOR RESIDUE GLA D1076
28DC1SOFTWARETHR D:54 , ASN D:55 , GLY D:62 , GLA D:1072 , GAL D:1073 , BGC D:1074 , S10 D:1075 , GLA D:1076 , BGC D:1078BINDING SITE FOR RESIDUE GAL D1077
29DC2SOFTWAREGAL D:1073 , BGC D:1074 , S10 D:1075 , GAL D:1077BINDING SITE FOR RESIDUE BGC D1078
30DC3SOFTWAREASP A:18 , ASN E:32 , ARG E:33 , TRP E:34 , ASN E:35 , GLA E:1071 , GLC J:1075BINDING SITE FOR RESIDUE GLA E1070
31DC4SOFTWARES10 A:1076 , TRP E:34 , GLA E:1070BINDING SITE FOR RESIDUE GLA E1071
32DC5SOFTWAREASP A:16 , THR E:31 , ASN E:32 , ARG E:33 , GLY E:62 , PHE E:63 , GAL E:1073BINDING SITE FOR RESIDUE GLA E1072
33DC6SOFTWARETHR E:54 , ASN E:55 , GLY E:62 , GLA E:1072 , GLC E:1074 , S10 E:1075BINDING SITE FOR RESIDUE GAL E1073
34DC7SOFTWAREASN E:55 , GAL E:1073 , THR I:46 , HOH I:2001 , ILE J:45BINDING SITE FOR RESIDUE GLC E1074
35DC8SOFTWAREASN G:32 , ARG G:33 , TRP G:34 , ASN G:35 , GLA G:1071 , TYR H:14 , ASP H:18 , TRP H:34BINDING SITE FOR RESIDUE GLA G1070
36DC9SOFTWAREGLA G:1070BINDING SITE FOR RESIDUE GLA G1071
37EC1SOFTWAREASN H:32 , ARG H:33 , TRP H:34 , ASN H:35 , GLA H:1071BINDING SITE FOR RESIDUE GLA H1070
38EC2SOFTWARETRP H:34 , GLA H:1070BINDING SITE FOR RESIDUE GLA H1071
39EC3SOFTWAREASN H:32 , ARG H:33 , PHE H:63 , SER H:64 , GAL H:1073 , ASP I:16BINDING SITE FOR RESIDUE GLA H1072
40EC4SOFTWARETHR H:54 , ASN H:55 , GLY H:62 , GLA H:1072 , GLC H:1074BINDING SITE FOR RESIDUE GAL H1073
41EC5SOFTWAREGAL H:1073BINDING SITE FOR RESIDUE GLC H1074
42EC6SOFTWAREGLC A:1075 , ASN I:32 , ARG I:33 , TRP I:34 , ASN I:35 , GLA I:1071 , ASP J:18 , TRP J:34BINDING SITE FOR RESIDUE GLA I1070
43EC7SOFTWARETRP I:34 , GLA I:1070BINDING SITE FOR RESIDUE GLA I1071
44EC8SOFTWAREPHE I:30 , THR I:31 , ASN I:32 , ARG I:33 , GLY I:62 , PHE I:63 , GLA I:1073 , GLA I:1077 , GLA I:1078 , ASP J:16BINDING SITE FOR RESIDUE GLA I1072
45EC9SOFTWARETHR I:54 , ASN I:55 , GLY I:62 , GLA I:1072 , BGC I:1074 , S10 I:1075 , GLA I:1077 , GLA I:1078 , BGC I:1079BINDING SITE FOR RESIDUE GLA I1073
46FC1SOFTWAREASN I:55 , GLA I:1073 , S10 I:1075 , GLA I:1078 , BGC I:1079BINDING SITE FOR RESIDUE BGC I1074
47FC2SOFTWAREPHE I:30 , THR I:31 , ASN I:32 , ARG I:33 , GLY I:62 , PHE I:63 , GLA I:1072 , GLA I:1073 , GLA I:1078 , ASP J:16BINDING SITE FOR RESIDUE GLA I1077
48FC3SOFTWARETHR I:54 , ASN I:55 , GLY I:62 , GLA I:1072 , GLA I:1073 , BGC I:1074 , S10 I:1075 , GLA I:1077 , BGC I:1079BINDING SITE FOR RESIDUE GLA I1078
49FC4SOFTWAREASN I:55 , GLA I:1073 , BGC I:1074 , S10 I:1075 , GLA I:1078BINDING SITE FOR RESIDUE BGC I1079
50FC5SOFTWAREARG A:33 , GLA A:1073 , ASP B:16 , ASP F:18 , TRP F:34 , ARG J:33 , TRP J:34 , ASN J:35 , GAL J:1071BINDING SITE FOR RESIDUE GLA J1070
51FC6SOFTWAREGLA A:1073 , GAL A:1074 , GLC A:1075 , ASP B:16 , TRP J:34 , GLA J:1070 , GLC J:1072 , S10 J:1077BINDING SITE FOR RESIDUE GAL J1071
52FC7SOFTWARETHR A:1 , GLU A:65 , ASP B:16 , HOH B:2001 , GAL J:1071 , S10 J:1077BINDING SITE FOR RESIDUE GLC J1072
53FC8SOFTWAREASN A:32 , GLA A:1070 , ASP F:16 , THR J:31 , ASN J:32 , ARG J:33 , GLY J:62 , PHE J:63 , SER J:64 , GAL J:1074 , S10 J:1076 , HOH J:2003BINDING SITE FOR RESIDUE GLA J1073
54FC9SOFTWAREGAL A:1071 , THR J:54 , ASN J:55 , GLY J:62 , GLA J:1073 , GLC J:1075 , S10 J:1076BINDING SITE FOR RESIDUE GAL J1074
55GC1SOFTWAREASP A:18 , GAL A:1071 , GLA E:1070 , ASN J:55 , GAL J:1074 , S10 J:1076BINDING SITE FOR RESIDUE GLC J1075
56GC2SOFTWAREHIS I:58 , S10 I:1075BINDING SITE FOR RESIDUE SO4 I1076
57GC3SOFTWAREGAL A:1071 , GLC A:1072 , GAL B:71 , GLC B:72 , GLA E:1071BINDING SITE FOR RESIDUE S10 A1076
58GC4SOFTWAREASN C:32 , GLA C:1072 , GAL C:1075 , GLC C:1076BINDING SITE FOR RESIDUE S10 C1073
59GC5SOFTWAREGLY D:60 , GAL D:1073 , BGC D:1074 , GAL D:1077 , BGC D:1078BINDING SITE FOR RESIDUE S10 D1075
60GC6SOFTWAREGAL E:1073 , ILE F:45BINDING SITE FOR RESIDUE S10 E1075
61GC7SOFTWAREGLC B:1075 , GAL B:1077BINDING SITE FOR RESIDUE S10 F1073
62GC8SOFTWAREGLA I:1073 , BGC I:1074 , SO4 I:1076 , GLA I:1078 , BGC I:1079BINDING SITE FOR RESIDUE S10 I1075
63GC9SOFTWAREASN A:32 , GAL A:1074 , GLC A:1075 , ASP J:17 , THR J:19 , ASN J:32 , GLA J:1073 , GAL J:1074 , GLC J:1075BINDING SITE FOR RESIDUE S10 J1076
64HC1SOFTWAREGAL J:1071 , GLC J:1072BINDING SITE FOR RESIDUE S10 J1077

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:4 -A:57
2B:4 -B:57
3C:4 -C:57
4D:4 -D:57
5E:4 -E:57
6F:4 -F:57
7G:4 -G:57
8H:4 -H:57
9I:4 -I:57
10J:4 -J:57

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2C5C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2C5C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2C5C)

(-) Exons   (0, 0)

(no "Exon" information available for 2C5C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ca_ A: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cA00 A:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.....eeeee..eeeee...hhhhhhhhhhhhh.eeeee.......ee..eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c A  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain A from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ca_ A: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cA00 A:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.....eeeee..eeeee...hhhhhhhhhhhhh.eeeee.......ee..eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c A  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain B from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cb_ B: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cB00 B:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c B  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain B from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cb_ B: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cB00 B:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c B  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain C from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cc_ C: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cC00 C:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c C  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain C from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cc_ C: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cC00 C:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c C  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cd_ D: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cD00 D:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c D  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cd_ D: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cD00 D:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................................hhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c D  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain E from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ce_ E: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cE00 E:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c E  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain E from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ce_ E: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cE00 E:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c E  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain F from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cf_ F: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cF00 F:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.....eeeee..eeeee...hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c F  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain F from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cf_ F: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cF00 F:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee.....eeeee..eeeee...hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c F  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain G from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cg_ G: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cG00 G:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..................hhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c G  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain G from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cg_ G: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cG00 G:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee..................hhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c G  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain H from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ch_ H: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cH00 H:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c H  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain H from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ch_ H: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cH00 H:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c H  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain I from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ci_ I: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cI00 I:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c I  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain I from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5ci_ I: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cI00 I:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................................hhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c I  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain J from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH19 | P69179 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH19   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cj_ J: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cJ00 J:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c J  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60         


Chain J from PDB  Type:PROTEIN  Length:69
 aligned with STXB_BPH30 | P69178 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:69
                                    30        40        50        60        70        80         
            STXB_BPH30   21 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 89
               SCOP domains d2c5cj_ J: Verotoxin-1/shiga-toxin, B-pentamer                        SCOP domains
               CATH domains 2c5cJ00 J:1-69  [code=2.40.50.70, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....................hhhhhhhhhhhhh.eeeee...........eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2c5c J  1 TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR 69
                                    10        20        30        40        50        60
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 10)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2C5C)

(-) Gene Ontology  (3, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (STXB_BPH30 | P69178)
biological process
    GO:0019836    hemolysis by symbiont of host erythrocytes    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B,C,D,E,F,G,H,I,J   (STXB_BPH19 | P69179)
biological process
    GO:0019836    hemolysis by symbiont of host erythrocytes    The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  STXB_BPH19 | P69179
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  STXB_BPH30 | P69178
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STXB_BPH19 | P69179: 1bos 1c48 1c4q 1cqf 1czg 1czw 1d1i 1d1k 1ojf 1qnu 2xsc 4ull
        STXB_BPH30 | P69178: 1bos 1c48 1c4q 1cqf 1czg 1czw 1d1i 1d1k 1ojf 2xsc 4ull

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2C5C)