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(-) Description

Title :  CRYSTAL STRUCTURE OF NITROALKANE OXIDASE IN COMPLEX WITH SPERMINE, A COMPETITIVE INHIBITOR
 
Authors :  A. Nagpal, M. P. Valley, P. F. Fitzpatrick, A. M. Orville
Date :  10 Sep 05  (Deposition) - 01 Feb 06  (Release) - 04 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  Oxidoreductase, Flavoenzyme, Nitroalkane, Acyl-Coa Dehydrogenase, Long Cell Edge, Fad, Inhibitor, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nagpal, M. P. Valley, P. F. Fitzpatrick, A. M. Orville
Crystal Structures Of Nitroalkane Oxidase: Insights Into The Reaction Mechanism From A Covalent Complex Of The Flavoenzyme Trapped During Turnover.
Biochemistry V. 45 1138 2006
PubMed-ID: 16430210  |  Reference-DOI: 10.1021/BI051966W
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NITROALKANE OXIDASE
    Atcc: 695
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETNAO4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: FUSARIUM OXYSPORUM
    Organism Taxid: 5507

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (2x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 27)

Asymmetric Unit (4, 27)
No.NameCountTypeFull Name
1FAD6Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL15Ligand/IonGLYCEROL
3PE42Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
4SPM4Ligand/IonSPERMINE
Biological Unit 1 (4, 19)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL11Ligand/IonGLYCEROL
3PE41Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
4SPM3Ligand/IonSPERMINE
Biological Unit 2 (4, 16)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL8Ligand/IonGLYCEROL
3PE42Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
4SPM2Ligand/IonSPERMINE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET B:70 , GLU B:76 , VAL B:95 , ALA B:98 , SER B:276 , LEU B:279 , PHE B:401 , ASP B:402 , FAD B:1432 , HOH B:2201BINDING SITE FOR RESIDUE SPM B1433
02AC2SOFTWAREMET C:70 , LEU C:73 , GLU C:76 , VAL C:95 , LEU C:99 , MET C:102 , PHE C:273 , SER C:276 , LEU C:279 , ASP C:402 , FAD C:1433 , HOH C:2164BINDING SITE FOR RESIDUE SPM C1434
03AC3SOFTWAREMET D:70 , GLU D:76 , VAL D:95 , ALA D:98 , MET D:102 , SER D:276 , LEU D:279 , PHE D:401 , ASP D:402 , FAD D:1433BINDING SITE FOR RESIDUE SPM D1434
04AC4SOFTWAREMET F:70 , LEU F:73 , GLU F:76 , VAL F:95 , MET F:102 , SER F:276 , PHE F:401 , ASP F:402 , FAD F:1432 , HOH F:2199BINDING SITE FOR RESIDUE SPM F1433
05AC5SOFTWARELEU A:131 , HIS A:133 , SER A:134 , GLY A:138 , THR A:139 , ALA A:140 , ASN A:141 , TRP A:169 , PRO A:170 , SER A:171 , LEU A:400 , PHE A:401 , ASP A:402 , GLY A:403 , GLY A:404 , ILE A:406 , GLY A:407 , HOH A:2078 , HOH A:2179 , HOH A:2190 , HOH A:2191 , HOH A:2192 , HOH A:2194 , HOH A:2195 , ARG B:304 , ILE B:310 , HIS B:313 , VAL B:316 , LYS B:375 , ALA B:376 , VAL B:377 , GLY B:378 , MET B:379 , HOH B:2166 , HOH B:2167 , GLN C:314BINDING SITE FOR RESIDUE FAD A1432
06AC6SOFTWAREARG A:304 , ILE A:310 , HIS A:313 , VAL A:316 , LYS A:375 , ALA A:376 , VAL A:377 , GLY A:378 , MET A:379 , LEU B:131 , HIS B:133 , SER B:134 , GLY B:138 , THR B:139 , ALA B:140 , ASN B:141 , TRP B:169 , PRO B:170 , SER B:171 , LEU B:400 , PHE B:401 , ASP B:402 , GLY B:403 , GLY B:404 , ILE B:406 , GLY B:407 , LEU B:408 , ARG B:411 , SPM B:1433 , HOH B:2079 , HOH B:2195 , HOH B:2196 , HOH B:2197 , HOH B:2198 , HOH B:2199 , HOH B:2200 , GLN D:314BINDING SITE FOR RESIDUE FAD B1432
07AC7SOFTWARELEU B:341 , GLU B:342 , LYS B:351 , HOH B:2204 , HOH B:2206 , HOH B:2207BINDING SITE FOR RESIDUE PE4 B1436
08AC8SOFTWAREGLN A:314 , LEU C:131 , HIS C:133 , SER C:134 , GLY C:138 , THR C:139 , ALA C:140 , ASN C:141 , TRP C:169 , PRO C:170 , SER C:171 , LEU C:400 , PHE C:401 , ASP C:402 , GLY C:403 , GLY C:404 , ILE C:406 , GLY C:407 , ARG C:411 , SPM C:1434 , HOH C:2065 , HOH C:2160 , HOH C:2161 , HOH C:2162 , HOH C:2163 , ARG D:304 , ILE D:310 , HIS D:313 , VAL D:316 , LYS D:375 , ALA D:376 , VAL D:377 , GLY D:378 , MET D:379 , HOH D:2130BINDING SITE FOR RESIDUE FAD C1433
09AC9SOFTWAREGLN B:314 , ARG C:304 , ILE C:310 , HIS C:313 , VAL C:316 , LYS C:375 , ALA C:376 , VAL C:377 , GLY C:378 , MET C:379 , HOH C:2131 , LEU D:131 , HIS D:133 , SER D:134 , GLY D:138 , THR D:139 , ALA D:140 , ASN D:141 , TRP D:169 , PRO D:170 , SER D:171 , LEU D:400 , PHE D:401 , ASP D:402 , GLY D:403 , GLY D:404 , ILE D:406 , GLY D:407 , LEU D:408 , SPM D:1434 , HOH D:2154 , HOH D:2155 , HOH D:2156 , HOH D:2157 , HOH D:2158BINDING SITE FOR RESIDUE FAD D1433
10BC1SOFTWARELEU E:131 , HIS E:133 , SER E:134 , GLY E:138 , THR E:139 , ALA E:140 , ASN E:141 , TRP E:169 , PRO E:170 , SER E:171 , THR E:240 , GLN E:314 , LEU E:400 , PHE E:401 , ASP E:402 , GLY E:403 , GLY E:404 , ILE E:406 , GLY E:407 , ARG E:411 , HOH E:2178 , HOH E:2179 , HOH E:2180 , HOH E:2181 , HOH E:2182 , HOH E:2183 , HOH E:2184 , ARG F:304 , ILE F:310 , HIS F:313 , VAL F:316 , LYS F:375 , ALA F:376 , VAL F:377 , GLY F:378 , MET F:379BINDING SITE FOR RESIDUE FAD E1432
11BC2SOFTWAREARG E:304 , ILE E:310 , HIS E:313 , VAL E:316 , LYS E:375 , ALA E:376 , VAL E:377 , GLY E:378 , MET E:379 , HOH E:2154 , LEU F:131 , HIS F:133 , SER F:134 , GLY F:138 , THR F:139 , ALA F:140 , ASN F:141 , TRP F:169 , PRO F:170 , SER F:171 , GLN F:314 , LEU F:400 , PHE F:401 , ASP F:402 , GLY F:403 , GLY F:404 , ILE F:406 , GLY F:407 , LEU F:408 , ARG F:411 , SPM F:1433 , HOH F:2195 , HOH F:2196 , HOH F:2197 , HOH F:2198BINDING SITE FOR RESIDUE FAD F1432
12BC3SOFTWARELEU F:341 , GLU F:342 , LYS F:351 , HOH F:2203 , HOH F:2204 , HOH F:2205BINDING SITE FOR RESIDUE PE4 F1435
13BC4SOFTWAREGLU A:71 , GLU A:342 , HOH A:2030BINDING SITE FOR RESIDUE GOL A1433
14BC5SOFTWAREILE B:360 , ASP B:364 , ARG B:410 , GOL B:1435 , HOH B:2163 , HOH B:2202 , HOH B:2203 , ASP D:322BINDING SITE FOR RESIDUE GOL B1434
15BC6SOFTWARELYS A:375 , ASP B:364 , GLU B:368 , GOL B:1434 , HOH B:2162 , HOH B:2163 , HOH B:2202 , HOH B:2203BINDING SITE FOR RESIDUE GOL B1435
16BC7SOFTWAREILE A:360 , ASP A:364 , ASP C:322 , ARG C:326BINDING SITE FOR RESIDUE GOL C1432
17BC8SOFTWAREASP A:322 , ILE A:325 , ILE C:360 , ASP C:364 , ARG C:410BINDING SITE FOR RESIDUE GOL C1435
18BC9SOFTWAREVAL A:2 , GLN C:10 , SER C:72 , VAL C:74 , GLU C:342BINDING SITE FOR RESIDUE GOL C1436
19CC1SOFTWAREILE C:371 , ASP C:372 , LYS C:375 , HOH C:2127 , HOH C:2132 , ASP D:364 , VAL D:367 , GLU D:368 , GOL D:1432BINDING SITE FOR RESIDUE GOL C1437
20CC2SOFTWAREGLU C:368 , GOL C:1437 , HOH C:2125 , ASP D:372 , LYS D:375 , HOH D:2127 , HOH D:2153BINDING SITE FOR RESIDUE GOL D1432
21CC3SOFTWARETHR D:26 , SER D:29 , VAL D:86 , HOH D:2159BINDING SITE FOR RESIDUE GOL D1435
22CC4SOFTWAREASP B:322 , ILE D:360 , ASP D:364 , ARG D:410BINDING SITE FOR RESIDUE GOL D1436
23CC5SOFTWAREALA D:13 , HIS D:16 , ALA D:17 , ILE D:79 , HOH D:2024BINDING SITE FOR RESIDUE GOL D1437
24CC6SOFTWAREASP E:322 , ILE E:360 , ASP E:364 , ARG E:410BINDING SITE FOR RESIDUE GOL E1433
25CC7SOFTWAREGLU E:368 , ILE E:371 , ASP E:372 , LYS E:375 , GOL E:1435 , HOH E:2185 , HOH E:2186 , GLU F:368 , HOH F:2164BINDING SITE FOR RESIDUE GOL E1434
26CC8SOFTWARELYS E:319 , ARG E:326 , ASP E:372 , LYS E:375 , GOL E:1434 , HOH E:2151 , HOH E:2186 , HOH E:2187 , HOH F:2200BINDING SITE FOR RESIDUE GOL E1435
27CC9SOFTWAREASP F:322 , ILE F:325 , TYR F:361 , ASP F:364 , ARG F:410 , HOH F:2147 , HOH F:2200 , HOH F:2201 , HOH F:2202BINDING SITE FOR RESIDUE GOL F1434

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2C12)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2C12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2C12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2C12)

(-) Exons   (0, 0)

(no "Exon" information available for 2C12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12a2 A:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12a1 A:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhh.hhhh.......eeee....................eeeee..eeeeeeeee......hhh.....eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.....hhhhhhhhhh...........hhhhhhhhh........hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 A   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431


Chain B from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12b2 B:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12b1 B:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhh.hhh........eeee....................eeeee..eeeeeeeee..............eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh...........hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 B   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431


Chain C from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12c2 C:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12c1 C:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.......eeee....................eeeee..eeeeeeeee..............eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.....hhhhhhhhhh...........hhhhhhhhhh.......hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 C   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431


Chain D from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12d2 D:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12d1 D:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh........eeee....................eeeee..eeeeeeeee..............eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.....hhhhhhhhhh...........hhhhhhhhh........hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 D   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431


Chain E from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12e2 E:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12e1 E:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhh.......eeee....................eeeee..eeeeeeee...............eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh...........hhhhhhhhhh.......hhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 E   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431


Chain F from PDB  Type:PROTEIN  Length:430
 aligned with NAO_FUSOX | Q8X1D8 from UniProtKB/Swiss-Prot  Length:439

    Alignment length:430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
            NAO_FUSOX     2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
               SCOP domains d2c12f2 F:2-260 Nitroalkane oxidase                                                                                                                                                                                                                                d2c12f1 F:261-431 Nitroalkane oxidase                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhh....hhh..hhh......hhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhh...........eeee....................eeeee..eeeeeeeee..............eeeeeee..............hhhheeeeee.hhhhh...hhheeeee.............eeee..eeeehhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.....hhhhhhhhhh...........hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2c12 F   2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATYGS 431
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2C12)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2C12)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (NAO_FUSOX | Q8X1D8)
molecular function
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0003995    acyl-CoA dehydrogenase activity    Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0052664    nitroalkane oxidase activity    Catalysis of the reaction: nitroalkane + H2O + O2 = an aldehyde or ketone + nitrite + H2O2.
    GO:0050141    nitroethane oxidase activity    Catalysis of the reaction: nitroethane + H2O + O2 = acetaldehyde + nitrite + H2O2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016627    oxidoreductase activity, acting on the CH-CH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NAO_FUSOX | Q8X1D8: 2c0u 2reh 2zaf 3d9d 3d9e 3d9f 3d9g 3fcj

(-) Related Entries Specified in the PDB File

2c0u CRYSTAL STRUCTURE OF A COVALENT COMPLEX OF NITROALKANE OXIDASE TRAPPED DURING SUBSTRATE TURNOVER