2C08 - JenaLib

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Title :   RAT ENDOPHILIN A1 BAR DOMAIN

Authors :   J. L. Gallop, H. M. Kent, H. T. Mcmahon, P. R. Evans

Date :   26 Aug 05 (Deposition) - 14 Jun 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Endocytosis, Bar Domain, Membrane Curvature, Sh3 Domain, Acyltransferase, Coiled Coil, Lipid-Binding, Multigene Family, Phosphorylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. L. Gallop, C. C. Jao, H. M. Kent, P. J. Butler, P. R. Evans, R. Langen, H. T. Mcmahon
Mechanism Of Endophilin N-Bar Domain-Mediated Membrane Curvature.
Embo J. V. 25 2898 2006
PubMed-ID: 16763559 | Reference-DOI: 10.1038/SJ.EMBOJ.7601174

Molecule 1 - SH3-CONTAINING GRB2-LIKE PROTEIN 2
	Chains	:	A
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	BAR DOMAIN, RESIDUES 1-143
	Organism Common	:	RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	ENDOPHILIN A1, SH3 DOMAIN PROTEIN 2A, SH3P4

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 8)

No.	Name	Count	Type	Full Name
1	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 16)

No.	Name	Count	Type	Full Name
1	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2C08)

(no "SS Bond" information available for 2C08)

(no "Cis Peptide Bond" information available for 2C08)

(no "SAP(SNP)/Variant" information available for 2C08)

(no "PROSITE Motif" information available for 2C08)

Asymmetric Unit (6, 6)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENSRNOT00000008999	2a	ENSRNOE00000436067	chr5:104268400-104268471	72	SH3G2_RAT	1-24	24	0	-	-
1.3	ENSRNOT00000008999	3	ENSRNOE00000457989	chr5:104276496-104276568	73	SH3G2_RAT	25-49	25	1	A:25-49	25
1.4	ENSRNOT00000008999	4	ENSRNOE00000062036	chr5:104295141-104295284	144	SH3G2_RAT	49-97	49	1	A:49-97 (gaps)	49
1.5a	ENSRNOT00000008999	5a	ENSRNOE00000062149	chr5:104296193-104296326	134	SH3G2_RAT	97-141	45	1	A:97-141	45
1.6	ENSRNOT00000008999	6	ENSRNOE00000062311	chr5:104298663-104298821	159	SH3G2_RAT	142-194	53	1	A:142-194	53
1.7	ENSRNOT00000008999	7	ENSRNOE00000062475	chr5:104300776-104300879	104	SH3G2_RAT	195-229	35	1	A:195-229	35
1.8	ENSRNOT00000008999	8	ENSRNOE00000062624	chr5:104305039-104305169	131	SH3G2_RAT	229-273	45	1	A:229-247	19
1.9	ENSRNOT00000008999	9	ENSRNOE00000062798	chr5:104307549-104308099	551	SH3G2_RAT	273-338	66	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:204
 aligned with SH3G2_RAT | O35179 from UniProtKB/Swiss-Prot  Length:352

    Alignment length:223
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244   
            SH3G2_RAT    25 EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA 247
               SCOP domains d2c08a1 A:25-247 Endophilin-1                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..-------------------.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:25-49   -----------------------------------------------Exon 1.5a  PDB: A:97-141 UniProt: 97-141     Exon 1.6  PDB: A:142-194 UniProt: 142-194            Exon 1.7  PDB: A:195-229           ------------------ Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.4  PDB: A:49-97 (gaps) UniProt: 49-97     -----------------------------------------------------------------------------------------------------------------------------------Exon 1.8            Transcript 1 (2)
                 2c08 A  25 EGTKLDDDFKEmERKVDVTSRAVmEImTKTIEYLQPNPASRAK-------------------PQAEALLAEAmLKFGRELGDDCNFGPALGEVGEAmRELSEVKDSLDmEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSmFNLLEmDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA 247
                                    34 |      44   |  | 54        64  |      -         -  |     94  |    104       114      |124       134       144       154       164       174       184       194      |204  |    214       224       234       244   
                                      36-MSE      48-MSE             67                  87        97-MSE                 121-MSE     133-MSE                                                             201-MSE |                                        
                                                     51-MSE                                                                                                                                                     207-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: BAR/IMD domain-like (27)

Superfamily: BAR/IMD domain-like (27)

Family: BAR domain (11)

Protein domain: Endophilin-1 (5)

Norway rat (Rattus norvegicus) [TaxId: 10116] (1)

d2c08a1

A:25-247

(no "CATH Domain" information available for 2C08)

(no "Pfam Domain" information available for 2C08)

Asymmetric Unit(hide GO term definitions)

Chain A (SH3G2_RAT | O35179)

molecular function
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006897	endocytosis	A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
	GO:0002090	regulation of receptor internalization	Any process that modulates the frequency, rate or extent of receptor internalization.
	GO:0048488	synaptic vesicle endocytosis	Clathrin-mediated endocytosis of presynaptic membrane that recycles synaptic vesicle membrane and its components following synaptic vesicle exocytosis. This process starts with coating of the membrane with adaptor proteins and clathrin prior to invagination and ends when uncoating has finished.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	Sites
(no "Sites" information available for 2c08)

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(no "Cis Peptide Bonds" information available for 2c08)

Biological Unit
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	2c08
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(no "Related Entries Specified in the PDB File" available for 2C08)

Description

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Ligands, Modified Residues, Ions (1, 8)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (6, 6)

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