2BV6 - JenaLib

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Title :   CRYSTAL STRUCTURE OF MGRA, A GLOBAL REGULATOR AND MAJOR VIRULENCE DETERMINANT IN STAPHYLOCOCCUS AUREUS

Authors :   P. R. Chen, T. Bae, W. A. Williams, E. M. Duguid, P. A. Rice, O. Schneewind, C. He

Date :   22 Jun 05 (Deposition) - 20 Sep 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Transcriptional Regulator, Multidrug Resistance Regulator, Virulence Determinant, Transcriptional Factors (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. R. Chen, T. Bae, W. A. Williams, E. M. Duguid, P. A. Rice, O. Schneewind, C. He
An Oxidation-Sensing Mechanism Is Used By The Global Regulator Mgra In Staphylococcus Aureus.
Nat. Chem. Biol. V. 2 591 2006
PubMed-ID: 16980961 | Reference-DOI: 10.1038/NCHEMBIO820

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET28A
	Fragment	:	RESIDUES 5-142
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Strain	:	NEWMAN
	Synonym	:	MGRA

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:84 , ARG A:86	BINDING SITE FOR RESIDUE SO4 A1142

(no "SS Bond" information available for 2BV6)

(no "Cis Peptide Bond" information available for 2BV6)

(no "SAP(SNP)/Variant" information available for 2BV6)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_MARR_2	PS50995	MarR-type HTH domain profile.	MGRA_STAA8	8-139	1	A:8-139
1	HTH_MARR_2	PS50995	MarR-type HTH domain profile.	MGRA_STAAU	8-139	1	A:8-139
2	HTH_MARR_1	PS01117	MarR-type HTH domain signature.	MGRA_STAA8	68-102	1	A:68-102
2	HTH_MARR_1	PS01117	MarR-type HTH domain signature.	MGRA_STAAU	68-102	1	A:68-102

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_MARR_2	PS50995	MarR-type HTH domain profile.	MGRA_STAA8	8-139	2	A:8-139
1	HTH_MARR_2	PS50995	MarR-type HTH domain profile.	MGRA_STAAU	8-139	2	A:8-139
2	HTH_MARR_1	PS01117	MarR-type HTH domain signature.	MGRA_STAA8	68-102	2	A:68-102
2	HTH_MARR_1	PS01117	MarR-type HTH domain signature.	MGRA_STAAU	68-102	2	A:68-102

(no "Exon" information available for 2BV6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:137
 aligned with MGRA_STAA8 | Q2G0B1 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       
           MGRA_STAA8     5 HNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAF 141
               SCOP domains d2bv6a1 A:5-140 Transcriptional regulator MgrA                                                                                          - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.eeehhhhhhhh.....hhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---HTH_MARR_2  PDB: A:8-139 UniProt: 8-139                                                                                             -- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------HTH_MARR_1  PDB: A:68-102          --------------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv6 A   5 mNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRmEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAF 141
                            |       14        24        34        44        54        64        74 |      84        94       104       114       124       134       
                            |                                                                     76-MSE                                                             
                            5-MSE

Chain A from PDB  Type:PROTEIN  Length:137
 aligned with MGRA_STAAU | P0C1S0 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       
           MGRA_STAAU     5 HNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAF 141
               SCOP domains d2bv6a1 A:5-140 Transcriptional regulator MgrA                                                                                          - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.eeehhhhhhhh.....hhhhhhhhhhhh..eeeee.......eeeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---HTH_MARR_2  PDB: A:8-139 UniProt: 8-139                                                                                             -- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------HTH_MARR_1  PDB: A:68-102          --------------------------------------- PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bv6 A   5 mNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRmEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAF 141
                            |       14        24        34        44        54        64        74 |      84        94       104       114       124       134       
                            5-MSE                                                                 76-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: MarR-like transcriptional regulators (34)

Protein domain: Transcriptional regulator MgrA (1)

Staphylococcus aureus [TaxId: 1280] (1)

d2bv6a1

A:5-140

(no "CATH Domain" information available for 2BV6)

(no "Pfam Domain" information available for 2BV6)

Asymmetric Unit(hide GO term definitions)

Chain A (MGRA_STAAU | P0C1S0)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain A (MGRA_STAA8 | Q2G0B1)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0044212	transcription regulatory region DNA binding	Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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(no "Cis Peptide Bonds" information available for 2bv6)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	2bv6
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(no "Entries Sharing at Least One Protein Chain" available for 2BV6)

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