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(-) Description

Title :  SATELLITE TOBACCO NECROSIS VIRUS
 
Authors :  T. A. Jones, L. Liljas
Date :  14 Jun 05  (Deposition) - 18 Aug 05  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (60x)
Keywords :  Virus, Capsid, Tobacco Necrosis Satellite Virus, Virus/Viral Protein, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Jones, L. Liljas
Structure Of Satellite Tobacco Necrosis Virus After Crystallographic Refinement At 2. 5 A Resolution.
J. Mol. Biol. V. 177 735 1984
PubMed-ID: 6481804  |  Reference-DOI: 10.1016/0022-2836(84)90047-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAT PROTEIN
    Chains: A
    Organism Scientific: TOBACCO NECROSIS VIRUS
    Organism Taxid: 12054
    Synonym: SATELLITE TOBACCO NECROSIS VIRUS 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (60x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:25 , HOH A:2007 , HOH A:2009BINDING SITE FOR RESIDUE CA A 1196
2AC2SOFTWAREASP A:55 , HOH A:2055BINDING SITE FOR RESIDUE CA A 1197
3AC3SOFTWARETHR A:138 , HOH A:2122 , HOH A:2123BINDING SITE FOR RESIDUE CA A 1198

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BUK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BUK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BUK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BUK)

(-) Exons   (0, 0)

(no "Exon" information available for 2BUK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with COAT_STNV1 | P03606 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:184
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    
           COAT_STNV1    13 TMRAVKRMINTHLEHKRFALINSGNTNATAGTVQNLSNGIIQGDDINQRSGDQVRIVSHKLHVRGTAITVSQTFRFIWFRDNMNRGTTPTVLEVLNTANFMSQYNPITLQQKRFTILKDVTLNCSLTGESIKDRIINLPGQLVNYNGATAVAASNGPGAIFMLQIGDSLVGLWDSSYEAVYTDA 196
               SCOP domains d2buka_ A: STNV coat protein                                                                                                                                                             SCOP domains
               CATH domains 2bukA00 A:12-195  [code=2.60.120.20, no name defined]                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeeeeeeeee.....eeee.................eeeeeeeeeeeeee.....eeeeeeeeee........hhhhhh.........hhhhhhh..eeeeeeeeeee......eeeeeeeee..eee......hhhh....eeeeeeee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2buk A  12 TMRAVKRMINTHLEHKRFALINSGNTNATAGTVQNLSNGIIQGDDINQRSGDQVRIVSHKLHVRGTAITVSQTFRFIWFRDNMNRGTTPTVLEVLNTANFMSQYNPITLQQKRFTILKDVTLNCSLTGESIKDRIINLPGQLVNYNGATAVAASNGPGAIFMLQIGDSLVGLWDSSYEAVYTDA 195
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BUK)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (COAT_STNV1 | P03606)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAT_STNV1 | P03606: 3s4g 4bcu 4v4m

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