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(-) Description

Title :  CRYSTAL STRUCTURE OF 3-CHLOROCATECHOL 1,2-DIOXYGENASE FROM RHODOCOCCUS OPACUS 1CP
 
Authors :  M. Ferraroni, I. P. Solyanikova, M. P. Kolomytseva, A. Scozzafava, L. A. Golovleva, F. Briganti
Date :  15 Apr 05  (Deposition) - 24 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Beta Barrel, Oxidoreductase, Dioxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, M. P. Kolomytseva, I. P. Solyanikova, A. Scozzafava, L. A. Golovleva, F. Briganti
Crystal Structure Of 3-Chlorocatechol 1, 2-Dioxygenase Key Enzyme Of A New Modified Ortho-Pathway From The Gram-Positive Rhodococcus Opacus 1Cp Grown On 2-Chlorophenol
J. Mol. Biol. V. 360 788 2006
PubMed-ID: 16793061  |  Reference-DOI: 10.1016/J.JMB.2006.05.046
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-CHLOROCATECHOL 1,2-DIOXYGENASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.13.11.1
    Organism Scientific: RHODOCOCCUS OPACUS
    Organism Taxid: 37919
    Strain: 1CP

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A   E   
Biological Unit 2 (1x):  B   F  
Biological Unit 3 (1x):   C   G 
Biological Unit 4 (1x):    D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 40)

Asymmetric Unit (4, 40)
No.NameCountTypeFull Name
1BHO8Ligand/IonBENZHYDROXAMIC ACID
2FE8Ligand/IonFE (III) ION
3LPP8Ligand/Ion2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4MG16Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1BHO2Ligand/IonBENZHYDROXAMIC ACID
2FE-1Ligand/IonFE (III) ION
3LPP2Ligand/Ion2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1BHO2Ligand/IonBENZHYDROXAMIC ACID
2FE-1Ligand/IonFE (III) ION
3LPP2Ligand/Ion2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1BHO2Ligand/IonBENZHYDROXAMIC ACID
2FE-1Ligand/IonFE (III) ION
3LPP2Ligand/Ion2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1BHO2Ligand/IonBENZHYDROXAMIC ACID
2FE-1Ligand/IonFE (III) ION
3LPP2Ligand/Ion2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (40, 40)

Asymmetric Unit (40, 40)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:133 , TYR A:167 , HIS A:191 , HIS A:193 , BHO A:1256BINDING SITE FOR RESIDUE FE A1255
02AC2SOFTWAREHOH A:2030 , HOH A:2088 , HOH A:2094 , HOH A:2095BINDING SITE FOR RESIDUE MG A1258
03AC3SOFTWAREHOH A:2028 , HOH A:2029 , HOH A:2033 , HOH A:2087 , HOH A:2090 , HOH A:2093BINDING SITE FOR RESIDUE MG A1259
04AC4SOFTWARETYR B:133 , TYR B:167 , HIS B:191 , HIS B:193 , BHO B:1256BINDING SITE FOR RESIDUE FE B1255
05AC5SOFTWAREHOH B:2084 , HOH B:2085 , HOH B:2088 , HOH B:2090BINDING SITE FOR RESIDUE MG B1258
06AC6SOFTWAREHOH B:2026 , HOH B:2027 , HOH B:2030 , HOH B:2083 , HOH B:2089 , HOH B:2198BINDING SITE FOR RESIDUE MG B1259
07AC7SOFTWAREHOH B:2144 , HOH B:2145 , HOH G:2087BINDING SITE FOR RESIDUE MG B1260
08AC8SOFTWARETYR C:133 , TYR C:167 , HIS C:191 , HIS C:193 , BHO C:1256BINDING SITE FOR RESIDUE FE C1255
09AC9SOFTWAREHOH C:2023 , HOH C:2024 , HOH C:2059 , HOH C:2166 , HOH C:2168BINDING SITE FOR RESIDUE MG C1258
10BC1SOFTWAREHOH C:2044 , HOH C:2073 , HOH C:2074 , HOH F:2151 , HOH F:2153 , HOH F:2155BINDING SITE FOR RESIDUE MG C1259
11BC2SOFTWAREHOH A:2171 , HOH C:2057 , HOH C:2060BINDING SITE FOR RESIDUE MG C1260
12BC3SOFTWAREHOH A:2157 , HOH A:2159 , HOH H:2100 , HOH H:2101BINDING SITE FOR RESIDUE MG C1261
13BC4SOFTWARETYR D:133 , TYR D:167 , HIS D:191 , HIS D:193 , BHO D:1256BINDING SITE FOR RESIDUE FE D1255
14BC5SOFTWAREHOH D:2023 , HOH D:2024 , HOH D:2027 , HOH D:2076 , HOH D:2083BINDING SITE FOR RESIDUE MG D1258
15BC6SOFTWAREHOH D:2058 , HOH D:2143 , HOH D:2144 , HOH D:2150 , HOH E:2110 , HOH E:2111BINDING SITE FOR RESIDUE MG D1259
16BC7SOFTWARETYR E:133 , TYR E:167 , HIS E:191 , HIS E:193 , BHO E:1256BINDING SITE FOR RESIDUE FE E1255
17BC8SOFTWAREHOH E:2036 , HOH E:2090BINDING SITE FOR RESIDUE MG E1258
18BC9SOFTWARETYR F:133 , TYR F:167 , HIS F:191 , HIS F:193 , BHO F:1256 , HOH F:2169BINDING SITE FOR RESIDUE FE F1255
19CC1SOFTWAREHOH F:2032 , HOH F:2033 , HOH F:2036 , HOH F:2084 , HOH F:2088BINDING SITE FOR RESIDUE MG F1258
20CC2SOFTWARETYR G:133 , TYR G:167 , HIS G:191 , HIS G:193 , BHO G:1256BINDING SITE FOR RESIDUE FE G1255
21CC3SOFTWAREHOH G:2022 , HOH G:2023 , HOH G:2025 , HOH G:2069 , HOH G:2071BINDING SITE FOR RESIDUE MG G1258
22CC4SOFTWARETYR H:133 , TYR H:167 , HIS H:191 , HIS H:193 , BHO H:1256BINDING SITE FOR RESIDUE FE H1255
23CC5SOFTWAREHOH H:2030 , HOH H:2031 , HOH H:2081 , HOH H:2087 , HOH H:2174BINDING SITE FOR RESIDUE MG H1258
24CC6SOFTWARESER D:66 , HOH D:2022 , HOH D:2026 , HOH D:2075 , HOH D:2079 , HOH D:2080 , HOH D:2081BINDING SITE FOR RESIDUE MG H1259
25CC7SOFTWARELEU A:49 , VAL A:53 , PRO A:77 , TYR A:78 , TYR A:133 , TYR A:167 , ILE A:169 , ARG A:188 , HIS A:191 , HIS A:193 , GLN A:207 , FE A:1255 , HOH A:2266BINDING SITE FOR RESIDUE BHO A1256
26CC8SOFTWAREGLU A:30 , ALA A:33 , SER A:34 , TRP A:37 , LPP E:1257BINDING SITE FOR RESIDUE LPP A1257
27CC9SOFTWARELEU B:49 , VAL B:53 , ILE B:74 , GLY B:76 , PRO B:77 , TYR B:78 , TYR B:133 , TYR B:167 , ILE B:169 , ARG B:188 , HIS B:191 , HIS B:193 , GLN B:207 , FE B:1255 , HOH B:2240BINDING SITE FOR RESIDUE BHO B1256
28DC1SOFTWAREALA B:33 , SER B:34 , TRP B:37 , LEU B:178 , HOH B:2241 , THR F:6 , LEU F:51BINDING SITE FOR RESIDUE LPP B1257
29DC2SOFTWARELEU C:49 , VAL C:53 , ILE C:74 , GLY C:76 , PRO C:77 , TYR C:78 , TYR C:133 , TYR C:167 , ARG C:188 , HIS C:191 , HIS C:193 , FE C:1255 , HOH C:2203BINDING SITE FOR RESIDUE BHO C1256
30DC3SOFTWAREGLU C:30 , SER C:34 , TRP C:37 , THR G:6 , LPP G:1257BINDING SITE FOR RESIDUE LPP C1257
31DC4SOFTWARELEU D:49 , VAL D:53 , GLY D:76 , PRO D:77 , TYR D:78 , TYR D:133 , TYR D:167 , ARG D:188 , HIS D:191 , HIS D:193 , GLN D:207 , FE D:1255 , HOH D:2241BINDING SITE FOR RESIDUE BHO D1256
32DC5SOFTWAREGLU D:30 , ALA D:33 , SER D:34 , TRP D:37 , THR H:6 , LPP H:1257BINDING SITE FOR RESIDUE LPP D1257
33DC6SOFTWARELEU E:49 , VAL E:53 , ILE E:74 , GLY E:76 , PRO E:77 , TYR E:78 , TYR E:133 , TYR E:167 , ARG E:188 , HIS E:191 , HIS E:193 , GLN E:207 , FE E:1255 , HOH E:2232BINDING SITE FOR RESIDUE BHO E1256
34DC7SOFTWAREILE A:17 , LPP A:1257 , SER E:34 , HOH E:2233BINDING SITE FOR RESIDUE LPP E1257
35DC8SOFTWARELEU F:49 , VAL F:53 , PRO F:77 , TYR F:78 , TYR F:133 , TYR F:167 , ILE F:169 , ARG F:188 , HIS F:191 , HIS F:193 , FE F:1255 , HOH F:2169 , HOH F:2229BINDING SITE FOR RESIDUE BHO F1256
36DC9SOFTWARETHR B:6 , ILE B:17 , SER F:34 , TRP F:37 , LEU F:178 , HOH F:2230BINDING SITE FOR RESIDUE LPP F1257
37EC1SOFTWARELEU G:49 , VAL G:53 , PRO G:77 , TYR G:78 , TYR G:133 , TYR G:167 , ILE G:169 , ARG G:188 , HIS G:191 , HIS G:193 , FE G:1255 , HOH G:2180BINDING SITE FOR RESIDUE BHO G1256
38EC2SOFTWAREMET C:13 , LEU C:51 , LPP C:1257 , SER G:34 , TRP G:37BINDING SITE FOR RESIDUE LPP G1257
39EC3SOFTWARELEU H:49 , ASP H:52 , VAL H:53 , ILE H:74 , GLY H:76 , PRO H:77 , TYR H:78 , TYR H:133 , TYR H:167 , ILE H:169 , ARG H:188 , HIS H:191 , HIS H:193 , GLN H:207 , FE H:1255 , HOH H:2205BINDING SITE FOR RESIDUE BHO H1256
40EC4SOFTWARETHR D:6 , MET D:13 , ILE D:17 , LPP D:1257 , ILE H:17 , ALA H:33 , SER H:34 , TRP H:37BINDING SITE FOR RESIDUE LPP H1257

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BOY)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ile A:88 -Pro A:89
2Gln A:238 -Ser A:239
3Ile B:88 -Pro B:89
4Ile C:88 -Pro C:89
5Ile D:88 -Pro D:89
6Ile E:88 -Pro E:89
7Ile F:88 -Pro F:89
8Ile G:88 -Pro G:89
9Ile H:88 -Pro H:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BOY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BOY)

(-) Exons   (0, 0)

(no "Exon" information available for 2BOY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boya_ A: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyA00 A:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....................................eeeeeeeee..........eeeee....................eeeee.....eeeeeee....ee....hhhhhhhhhh....ee..eeeeeee......eeeeeee..............hhh.ee..eeee....eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy A   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyb_ B: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyB00 B:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....................................eeeeeeeee..........eeeee....................eeeee.....eeeeeee....ee....hhhhhhhhhhh...ee..eeeeeee......eeeeeee..............hhh.ee..eeee..-.eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy B   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQ-GPHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      |241       251   
                                                                                                                                                                                                                                                                      238 |              
                                                                                                                                                                                                                                                                        240              


Chain C from PDB  Type:PROTEIN  Length:251
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyc_ C: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyC00 C:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....................................eeeeeeeee..........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhh....ee..eeeeeee......eeeeeee..............hhh.ee..eeee.--.eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy C   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEA--GPHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231     | 241       251   
                                                                                                                                                                                                                                                                     237  |              
                                                                                                                                                                                                                                                                        240              


Chain D from PDB  Type:PROTEIN  Length:251
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyd_ D: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyD00 D:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....................................eeeeeeeee..........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhh....ee..eeeeeee......eeeeeee..............hhh.ee..eee..--..eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy D   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEA--GPHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231     | 241       251   
                                                                                                                                                                                                                                                                     237  |              
                                                                                                                                                                                                                                                                        240              


Chain E from PDB  Type:PROTEIN  Length:252
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    
         Q8G9L3_RHOOP     1 MSTDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boye_ E: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2boyE00 E:1-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........................ee..........eeeeeeeee..........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhhh...ee...eeeeee......eeeeeee..............hhh.ee..eee..--..eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy E   1 MSTDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEA--GPHFETSYKFTLGKV 254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      |240       250    
                                                                                                                                                                                                                                                                      237  |              
                                                                                                                                                                                                                                                                         240              


Chain F from PDB  Type:PROTEIN  Length:248
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyf_ F: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyF00 F:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....................................eeeeeeeee..........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhhh...ee...eeeeee......eeeeeee..............hhh.ee..ee.-----..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy F   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKI-----PHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   |   241       251   
                                                                                                                                                                                                                                                                   235   241             


Chain G from PDB  Type:PROTEIN  Length:251
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250    
         Q8G9L3_RHOOP     1 MSTDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyg_ G: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2boyG00 G:1-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........................ee..........eeeeeeeeee.........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhh....ee...eeeeee......eeeeeee..............hhh.ee..eee..---.eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy G   1 MSTDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEA---PHFETSYKFTLGKV 254
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230      |  -|      250    
                                                                                                                                                                                                                                                                      237 241             


Chain H from PDB  Type:PROTEIN  Length:248
 aligned with Q8G9L3_RHOOP | Q8G9L3 from UniProtKB/TrEMBL  Length:254

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q8G9L3_RHOOP     2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEQNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV 254
               SCOP domains d2boyh_ H: automated matches                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2boyH00 H:2-254 Protocatechuate 3,4-Dioxygenase, subunit A                                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........................ee..........eeeeeeeee..........eeeeee...................eeeee.....eeeeeee....ee....hhhhhhhhhh....ee...eeeeee......eeeeeee..............hhh.ee.....-----..eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2boy H   2 STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKI-----PHFETSYKFTLGKV 254
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   |   241       251   
                                                                                                                                                                                                                                                                   235   241
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BOY)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q8G9L3_RHOOP | Q8G9L3)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0018576    catechol 1,2-dioxygenase activity    Catalysis of the reaction: catechol + O2 = cis,cis-muconate.
    GO:0051213    dioxygenase activity    Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016702    oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
biological process
    GO:0009712    catechol-containing compound metabolic process    The chemical reactions and pathways involving a compound containing a pyrocatechol (1,2-benzenediol) nucleus or substituent.
    GO:0006725    cellular aromatic compound metabolic process    The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  2boy
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