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2BOY
Biol. Unit 1
Info
Asym.Unit (375 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (97 KB)
Biol.Unit 3 (95 KB)
Biol.Unit 4 (96 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3-CHLOROCATECHOL 1,2-DIOXYGENASE FROM RHODOCOCCUS OPACUS 1CP
Authors
:
M. Ferraroni, I. P. Solyanikova, M. P. Kolomytseva, A. Scozzafava, L. A. Golovleva, F. Briganti
Date
:
15 Apr 05 (Deposition) - 24 Aug 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Beta Barrel, Oxidoreductase, Dioxygenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Ferraroni, M. P. Kolomytseva, I. P. Solyanikova, A. Scozzafava, L. A. Golovleva, F. Briganti
Crystal Structure Of 3-Chlorocatechol 1, 2-Dioxygenase Key Enzyme Of A New Modified Ortho-Pathway From The Gram-Positive Rhodococcus Opacus 1Cp Grown On 2-Chlorophenol
J. Mol. Biol. V. 360 788 2006
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: BENZHYDROXAMIC ACID (BHOa)
1b: BENZHYDROXAMIC ACID (BHOb)
1c: BENZHYDROXAMIC ACID (BHOc)
1d: BENZHYDROXAMIC ACID (BHOd)
1e: BENZHYDROXAMIC ACID (BHOe)
1f: BENZHYDROXAMIC ACID (BHOf)
1g: BENZHYDROXAMIC ACID (BHOg)
1h: BENZHYDROXAMIC ACID (BHOh)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
2g: FE (III) ION (FEg)
2h: FE (III) ION (FEh)
3a: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPa)
3b: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPb)
3c: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPc)
3d: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPd)
3e: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPe)
3f: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPf)
3g: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPg)
3h: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOO... (LPPh)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
4j: MAGNESIUM ION (MGj)
4k: MAGNESIUM ION (MGk)
4l: MAGNESIUM ION (MGl)
4m: MAGNESIUM ION (MGm)
4n: MAGNESIUM ION (MGn)
4o: MAGNESIUM ION (MGo)
4p: MAGNESIUM ION (MGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BHO
2
Ligand/Ion
BENZHYDROXAMIC ACID
2
FE
-1
Ligand/Ion
FE (III) ION
3
LPP
2
Ligand/Ion
2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: BC2 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: DC6 (SOFTWARE)
12: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:133 , TYR A:167 , HIS A:191 , HIS A:193 , BHO A:1256
BINDING SITE FOR RESIDUE FE A1255
02
AC2
SOFTWARE
HOH A:2030 , HOH A:2088 , HOH A:2094 , HOH A:2095
BINDING SITE FOR RESIDUE MG A1258
03
AC3
SOFTWARE
HOH A:2028 , HOH A:2029 , HOH A:2033 , HOH A:2087 , HOH A:2090 , HOH A:2093
BINDING SITE FOR RESIDUE MG A1259
04
BC2
SOFTWARE
HOH A:2171 , HOH C:2057 , HOH C:2060
BINDING SITE FOR RESIDUE MG C1260
05
BC3
SOFTWARE
HOH A:2157 , HOH A:2159 , HOH H:2100 , HOH H:2101
BINDING SITE FOR RESIDUE MG C1261
06
BC6
SOFTWARE
HOH D:2058 , HOH D:2143 , HOH D:2144 , HOH D:2150 , HOH E:2110 , HOH E:2111
BINDING SITE FOR RESIDUE MG D1259
07
BC7
SOFTWARE
TYR E:133 , TYR E:167 , HIS E:191 , HIS E:193 , BHO E:1256
BINDING SITE FOR RESIDUE FE E1255
08
BC8
SOFTWARE
HOH E:2036 , HOH E:2090
BINDING SITE FOR RESIDUE MG E1258
09
CC7
SOFTWARE
LEU A:49 , VAL A:53 , PRO A:77 , TYR A:78 , TYR A:133 , TYR A:167 , ILE A:169 , ARG A:188 , HIS A:191 , HIS A:193 , GLN A:207 , FE A:1255 , HOH A:2266
BINDING SITE FOR RESIDUE BHO A1256
10
CC8
SOFTWARE
GLU A:30 , ALA A:33 , SER A:34 , TRP A:37 , LPP E:1257
BINDING SITE FOR RESIDUE LPP A1257
11
DC6
SOFTWARE
LEU E:49 , VAL E:53 , ILE E:74 , GLY E:76 , PRO E:77 , TYR E:78 , TYR E:133 , TYR E:167 , ARG E:188 , HIS E:191 , HIS E:193 , GLN E:207 , FE E:1255 , HOH E:2232
BINDING SITE FOR RESIDUE BHO E1256
12
DC7
SOFTWARE
ILE A:17 , LPP A:1257 , SER E:34 , HOH E:2233
BINDING SITE FOR RESIDUE LPP E1257
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2boya_ (A:)
1b: SCOP_d2boyh_ (H:)
1c: SCOP_d2boyb_ (B:)
1d: SCOP_d2boyc_ (C:)
1e: SCOP_d2boyd_ (D:)
1f: SCOP_d2boye_ (E:)
1g: SCOP_d2boyf_ (F:)
1h: SCOP_d2boyg_ (G:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Prealbumin-like
(433)
Superfamily
:
Aromatic compound dioxygenase
(111)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Rhodococcus opacus [TaxId: 37919]
(11)
1a
d2boya_
A:
1b
d2boyh_
H:
1c
d2boyb_
B:
1d
d2boyc_
C:
1e
d2boyd_
D:
1f
d2boye_
E:
1g
d2boyf_
F:
1h
d2boyg_
G:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2boyF00 (F:2-254)
1b: CATH_2boyH00 (H:2-254)
1c: CATH_2boyC00 (C:2-254)
1d: CATH_2boyD00 (D:2-254)
1e: CATH_2boyG00 (G:1-254)
1f: CATH_2boyB00 (B:2-254)
1g: CATH_2boyE00 (E:1-254)
1h: CATH_2boyA00 (A:2-254)
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(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Homologous Superfamily
:
Protocatechuate 3,4-Dioxygenase, subunit A
(43)
Rhodococcus opacus. Organism_taxid: 37919. Strain: 1cp
(2)
1a
2boyF00
F:2-254
1b
2boyH00
H:2-254
1c
2boyC00
C:2-254
1d
2boyD00
D:2-254
1e
2boyG00
G:1-254
1f
2boyB00
B:2-254
1g
2boyE00
E:1-254
1h
2boyA00
A:2-254
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (375 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (97 KB)
Header - Biol.Unit 2
Biol.Unit 3 (95 KB)
Header - Biol.Unit 3
Biol.Unit 4 (96 KB)
Header - Biol.Unit 4
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