2BME - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A

Authors :   A. J. Scheidig, S. K. Huber

Date :   13 Mar 05 (Deposition) - 25 Apr 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.57

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Gtp-Binding Protein, Vesicular Transport, Endocytosis, Prenylation, Protein Transport, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. K. Huber, A. J. Scheidig
High Resolution Crystal Structures Of Human Rab4A In Its Active And Inactive Conformations.
Febs Lett. V. 579 2821 2005
PubMed-ID: 15907487 | Reference-DOI: 10.1016/J.FEBSLET.2005.04.020

Molecule 1 - RAS-RELATED PROTEIN RAB4A
	Chains	:	A, B, C, D
	EC Number	:	3.6.5.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET19TEV
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	NUCLEOTIDE-BINDING DOMAIN, RESIDUES 1-184
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RAB4A

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 14)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GNP	4	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	MG	4	Ligand/Ion	MAGNESIUM ION
4	TRS	4	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 3 (3, 3)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:24 , THR A:42 , GNP A:1180 , HOH A:2032 , HOH A:2063	BINDING SITE FOR RESIDUE MG A1184
02	AC2	SOFTWARE	SER B:24 , THR B:42 , GNP B:1178 , HOH B:2040 , HOH B:2093	BINDING SITE FOR RESIDUE MG B1179
03	AC3	SOFTWARE	SER C:24 , THR C:42 , GNP C:1178 , HOH C:2037 , HOH C:2068	BINDING SITE FOR RESIDUE MG C1181
04	AC4	SOFTWARE	SER D:24 , THR D:42 , GNP D:1179 , HOH D:2036 , HOH D:2066	BINDING SITE FOR RESIDUE MG D1180
05	AC5	SOFTWARE	ALA A:19 , GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , SER A:24 , CYS A:25 , PHE A:35 , SER A:39 , HIS A:41 , THR A:42 , GLY A:68 , ASN A:123 , LYS A:124 , ASP A:126 , LEU A:127 , SER A:153 , ALA A:154 , LEU A:155 , MG A:1184 , HOH A:2027 , HOH A:2032 , HOH A:2063 , HOH A:2155 , HOH A:2156 , HOH A:2157	BINDING SITE FOR RESIDUE GNP A1180
06	AC6	SOFTWARE	LEU A:150 , GLU A:151 , GLU A:158 , ASN A:159 , HOH A:2134 , HOH A:2158 , HOH A:2159 , HOH A:2160 , LEU C:10 , LYS C:12 , GLN C:62 , GLY C:82 , HOH C:2092	BINDING SITE FOR RESIDUE TRS A1181
07	AC7	SOFTWARE	PHE A:47 , SER A:49 , LYS A:60 , GLN A:62 , ARG B:71	BINDING SITE FOR RESIDUE TRS A1182
08	AC8	SOFTWARE	ALA B:19 , GLY B:20 , THR B:21 , GLY B:22 , LYS B:23 , SER B:24 , CYS B:25 , PHE B:35 , LYS B:36 , SER B:39 , HIS B:41 , THR B:42 , GLY B:68 , ASN B:123 , LYS B:124 , ASP B:126 , LEU B:127 , SER B:153 , ALA B:154 , LEU B:155 , MG B:1179 , HOH B:2035 , HOH B:2040 , HOH B:2093 , HOH B:2209 , HOH B:2210 , HOH B:2211 , HOH B:2212 , HOH B:2213	BINDING SITE FOR RESIDUE GNP B1178
09	AC9	SOFTWARE	ALA C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , SER C:24 , CYS C:25 , PHE C:35 , SER C:39 , HIS C:41 , THR C:42 , GLY C:68 , ASN C:123 , LYS C:124 , ASP C:126 , LEU C:127 , SER C:153 , ALA C:154 , LEU C:155 , MG C:1181 , HOH C:2030 , HOH C:2037 , HOH C:2068 , HOH C:2161 , HOH C:2162 , HOH C:2163 , HOH C:2164 , HOH C:2165 , HOH C:2166 , HOH C:2167	BINDING SITE FOR RESIDUE GNP C1178
10	BC1	SOFTWARE	LEU A:10 , PHE A:11 , LYS A:12 , GLY A:82 , LYS C:125 , PHE C:135 , GLU C:151 , ASN C:159 , HOH C:2146 , HOH C:2168 , HOH C:2169 , HOH C:2170	BINDING SITE FOR RESIDUE TRS C1179
11	BC2	SOFTWARE	LEU D:10 , PHE D:11 , LYS D:12 , GLY D:82 , LYS D:125 , PHE D:135 , GLU D:151 , ASN D:159 , HOH D:2118 , HOH D:2136	BINDING SITE FOR RESIDUE TRS D1178
12	BC3	SOFTWARE	ALA D:19 , GLY D:20 , THR D:21 , GLY D:22 , LYS D:23 , SER D:24 , CYS D:25 , PHE D:35 , SER D:39 , HIS D:41 , THR D:42 , GLY D:68 , ASN D:123 , LYS D:124 , ASP D:126 , LEU D:127 , SER D:153 , ALA D:154 , LEU D:155 , MG D:1180 , HOH D:2033 , HOH D:2036 , HOH D:2038 , HOH D:2066 , HOH D:2137 , HOH D:2138 , HOH D:2139	BINDING SITE FOR RESIDUE GNP D1179
13	BC4	SOFTWARE	LEU A:147 , MET A:148 , HOH A:2132 , HOH A:2162 , ASP C:8	BINDING SITE FOR RESIDUE BME A1183
14	BC5	SOFTWARE	GLN C:69 , GLU C:70 , ARG C:71	BINDING SITE FOR RESIDUE BME C1180

(no "SS Bond" information available for 2BME)

(no "Cis Peptide Bond" information available for 2BME)

(no "SAP(SNP)/Variant" information available for 2BME)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB4A_HUMAN	9-216	4	A:6-179 B:6-177 C:6-177 D:6-177

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB4A_HUMAN	9-216	1	A:6-179 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB4A_HUMAN	9-216	1	- B:6-177 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB4A_HUMAN	9-216	1	- - C:6-177 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RAB	PS51419	small GTPase Rab1 family profile.	RAB4A_HUMAN	9-216	1	- - - D:6-177

Asymmetric Unit (7, 25)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000366690	1b	ENSE00001429124	chr1:229406879-229407117	239	RAB4A_HUMAN	1-11	11	4	A:4-8 B:5-8 C:4-8 D:4-8	5 4 5 5
1.2b	ENST00000366690	2b	ENSE00001710894	chr1:229422233-229422313	81	RAB4A_HUMAN	11-38	28	4	A:8-35 B:8-35 C:8-35 D:8-35	28 28 28 28
1.3a	ENST00000366690	3a	ENSE00001015822	chr1:229424476-229424590	115	RAB4A_HUMAN	38-76	39	4	A:35-73 B:35-73 C:35-73 D:35-73	39 39 39 39
1.5	ENST00000366690	5	ENSE00001671680	chr1:229431595-229431657	63	RAB4A_HUMAN	76-97	22	4	A:73-94 B:73-94 C:73-94 D:73-94	22 22 22 22
1.6a	ENST00000366690	6a	ENSE00001015820	chr1:229433229-229433383	155	RAB4A_HUMAN	97-149	53	4	A:94-146 B:94-146 C:94-146 D:94-146	53 53 53 53
1.8a	ENST00000366690	8a	ENSE00001442328	chr1:229434724-229434819	96	RAB4A_HUMAN	149-181	33	4	A:146-178 B:146-177 C:146-177 D:146-177	33 32 32 32
1.9	ENST00000366690	9	ENSE00001015815	chr1:229438609-229438736	128	RAB4A_HUMAN	181-218	38	1	A:178-179 - - -	2 - - -
1.10c	ENST00000366690	10c	ENSE00001842622	chr1:229439553-229441641	2089	RAB4A_HUMAN	-	0	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:176
 aligned with RAB4A_HUMAN | P20338 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:176
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176      
          RAB4A_HUMAN     7 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 182
               SCOP domains d2bmea_ A: automated matches                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeeee..eeeeeeeeee..hhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RAB  PDB: A:6-179 UniProt: 9-216                                                                                                                                               PROSITE
           Transcript 1 (1) 1.1b --------------------------Exon 1.3a  PDB: A:35-73 UniProt: 38-76 --------------------Exon 1.6a  PDB: A:94-146 UniProt: 97-149             -------------------------------1. Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.2b  PDB: A:8-35      -------------------------------------Exon 1.5  PDB: A:73-94---------------------------------------------------Exon 1.8a  PDB: A:146-178        - Transcript 1 (2)
                 2bme A   4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with RAB4A_HUMAN | P20338 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:173
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
          RAB4A_HUMAN     8 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 180
               SCOP domains d2bmeb_ B: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee....hhhhhhhhhhhh..........eeeeeeeeeee..eeeeeeeeee..hhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RAB  PDB: B:6-177 UniProt: 9-216                                                                                                                                             PROSITE
           Transcript 1 (1) 1.1b--------------------------Exon 1.3a  PDB: B:35-73 UniProt: 38-76 --------------------Exon 1.6a  PDB: B:94-146 UniProt: 97-149             ------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2b  PDB: B:8-35      -------------------------------------Exon 1.5  PDB: B:73-94---------------------------------------------------Exon 1.8a  PDB: B:146-177        Transcript 1 (2)
                 2bme B   5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174

Chain C from PDB  Type:PROTEIN  Length:174
 aligned with RAB4A_HUMAN | P20338 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:174
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176    
          RAB4A_HUMAN     7 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 180
               SCOP domains d2bmec_ C: automated matches                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..hhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --RAB  PDB: C:6-177 UniProt: 9-216                                                                                                                                             PROSITE
           Transcript 1 (1) 1.1b --------------------------Exon 1.3a  PDB: C:35-73 UniProt: 38-76 --------------------Exon 1.6a  PDB: C:94-146 UniProt: 97-149             ------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.2b  PDB: C:8-35      -------------------------------------Exon 1.5  PDB: C:73-94---------------------------------------------------Exon 1.8a  PDB: C:146-177        Transcript 1 (2)
                 2bme C   4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Chain D from PDB  Type:PROTEIN  Length:174
 aligned with RAB4A_HUMAN | P20338 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:174
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176    
          RAB4A_HUMAN     7 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 180
               SCOP domains d2bmed_ D: automated matches                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeee....hhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..hhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhh..hhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --RAB  PDB: D:6-177 UniProt: 9-216                                                                                                                                             PROSITE
           Transcript 1 (1) 1.1b --------------------------Exon 1.3a  PDB: D:35-73 UniProt: 38-76 --------------------Exon 1.6a  PDB: D:94-146 UniProt: 97-149             ------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.2b  PDB: D:8-35      -------------------------------------Exon 1.5  PDB: D:73-94---------------------------------------------------Exon 1.8a  PDB: D:146-177        Transcript 1 (2)
                 2bme D   4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: G proteins (693)

Protein domain: automated matches (173)

Human (Homo sapiens) [TaxId: 9606] (112)

1a	d2bmea_	A:
1b	d2bmeb_	B:
1c	d2bmec_	C:
1d	d2bmed_	D:

(no "CATH Domain" information available for 2BME)

(no "Pfam Domain" information available for 2BME)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (RAB4A_HUMAN | P20338)

molecular function
	GO:0001671	ATPase activator activity	Binds to and increases the ATP hydrolysis activity of an ATPase.
	GO:0051117	ATPase binding	Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
	GO:0019003	GDP binding	Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0035255	ionotropic glutamate receptor binding	Interacting selectively and non-covalently with an ionotropic glutamate receptor. Ionotropic glutamate receptors bind glutamate and exert an effect through the regulation of ion channels.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
	GO:0019905	syntaxin binding	Interacting selectively and non-covalently with a syntaxin, a SNAP receptor involved in the docking of synaptic vesicles at the presynaptic zone of a synapse.
biological process
	GO:0032482	Rab protein signal transduction	A series of molecular signals within the cell that are mediated by a member of the Rab family of proteins switching to a GTP-bound active state.
	GO:0019882	antigen processing and presentation	The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
	GO:0032781	positive regulation of ATPase activity	Any process that activates or increases the rate of ATP hydrolysis by an ATPase.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0030100	regulation of endocytosis	Any process that modulates the frequency, rate or extent of endocytosis.
	GO:0007264	small GTPase mediated signal transduction	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0032593	insulin-responsive compartment	A small membrane-bounded vesicle that releases its contents by exocytosis in response to insulin stimulation; the contents are enriched in GLUT4, IRAP and VAMP2.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0055037	recycling endosome	An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
	GO:0031982	vesicle	Any small, fluid-filled, spherical organelle enclosed by membrane.

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	2bme
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	RAB4A_HUMAN \| P20338	:	1yu9 1z0k 2bmd

2bmd	HIGH RESOLUTION STRUCTURE OF GDP-BOUND HUMAN RAB4A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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PROSITE Motifs (1, 4)

Exons (7, 25)

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Gene Ontology (28, 28)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File