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(-) Description

Title :  CRYSTAL STRUCTURE OF S133A ANFAEA-FERULIC ACID COMPLEX
 
Authors :  C. B. Faulds, R. Molina, R. Gonzalez, F. Husband, N. Juge, J. Sanz-Aparicio, J. A. Hermoso
Date :  02 Feb 05  (Deposition) - 07 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Degradation Plant Cell Walls, Feruloyl Esterase, Glycoprotein, Hydrolase, Serine Esterase, Signal, Xylan Degradation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. B. Faulds, R. Molina, R. Gonzalez, F. Husband, N. Juge, J. Sanz-Aparicio, J. A. Hermoso
Probing The Determinants Of Substrate Specificity Of A Feruloyl Esterase, Anfaea, From Aspergillus Niger
Febs J. V. 272 4362 2005
PubMed-ID: 16128806  |  Reference-DOI: 10.1111/J.1742-4658.2005.04849.X

(-) Compounds

Molecule 1 - FERULOYL ESTERASE A
    Chains: A, B, C
    EC Number: 3.1.1.73
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Taxid: 4922
    Mutation: YES
    Organism Scientific: ASPERGILLUS NIGER
    Organism Taxid: 5061
    Strain: CBS 120.49/N400
    Synonym: FERULIC ACID ESTERASE A, FAE-III, CINNAMOYL ESTERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1FER3Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOICACID
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1FER1Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOICACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1FER1Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOICACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 3 (3, 3)
No.NameCountTypeFull Name
1FER1Ligand/Ion3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOICACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:9 , ASN A:79 , THR A:83 , GLY A:98 , GLY A:99 , NDG A:901 , HOH A:2152 , HOH A:2153BINDING SITE FOR RESIDUE NAG A 900
2AC2SOFTWARETHR A:83 , TYR A:101 , NAG A:900 , HOH A:2155BINDING SITE FOR RESIDUE NDG A 901
3AC3SOFTWAREGLU B:8 , ASP B:9 , ASN B:79 , THR B:83 , GLY B:98 , NDG B:901BINDING SITE FOR RESIDUE NAG B 900
4AC4SOFTWARETHR B:83 , ILE B:105 , NAG B:900 , HOH B:2135BINDING SITE FOR RESIDUE NDG B 901
5AC5SOFTWAREASN C:79 , THR C:83 , GLY C:98 , TYR C:101 , ILE C:102 , NDG C:901BINDING SITE FOR RESIDUE NAG C 900
6AC6SOFTWARETHR C:83 , ILE C:105 , NAG C:900 , HOH C:2076 , HOH C:2077BINDING SITE FOR RESIDUE NDG C 901
7AC7SOFTWAREASP A:77 , TYR A:80 , TYR A:100 , ALA A:133 , PRO A:161 , VAL A:243 , HIS A:247 , HOH A:2064BINDING SITE FOR RESIDUE FER A 908
8AC8SOFTWARETHR B:68 , ASP B:77 , TYR B:80 , TYR B:100 , ALA B:133 , VAL B:243 , HIS B:247 , HOH B:2138 , HOH B:2139BINDING SITE FOR RESIDUE FER B 908
9AC9SOFTWARETHR C:68 , ASP C:77 , TYR C:80 , TYR C:100 , ALA C:133 , PRO C:161 , ILE C:196 , LEU C:199 , HIS C:247BINDING SITE FOR RESIDUE FER C 908

(-) SS Bonds  (9, 9)

Asymmetric Unit
No.Residues
1A:29 -A:258
2A:91 -A:94
3A:227 -A:234
4B:29 -B:258
5B:91 -B:94
6B:227 -B:234
7C:29 -C:258
8C:91 -C:94
9C:227 -C:234

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:199 -Pro A:200
2Asp A:217 -Pro A:218
3Leu B:199 -Pro B:200
4Asp B:217 -Pro B:218
5Leu C:199 -Pro C:200
6Asp C:217 -Pro C:218

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BJH)

(-) PROSITE Motifs  (1, 3)

Asymmetric Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIPASE_SERPS00120 Lipases, serine active site.FAEA_ASPNG148-157
 
 		  3A:127-136
B:127-136
C:127-136
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIPASE_SERPS00120 Lipases, serine active site.FAEA_ASPNG148-157
 
 		  1A:127-136
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIPASE_SERPS00120 Lipases, serine active site.FAEA_ASPNG148-157
 
 		  1-
B:127-136
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIPASE_SERPS00120 Lipases, serine active site.FAEA_ASPNG148-157
 
 		  1-
-
C:127-136

(-) Exons   (0, 0)

(no "Exon" information available for 2BJH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with FAEA_ASPNG | O42807 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:260
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
           FAEA_ASPNG    22 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 281
               SCOP domains d2bjha_ A: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2bjhA00 A:1-260  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhhh..........eeeeeeeee....eeeeeeee....eeeeee....hhhhhhhhhh..eee..........eeehhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhhhhhh....eeeeee.....eehhhhhhhhhhh.........eeeeee....hhhh.hhhh.ee...eeeee........eeee......hhhhh.....hhhhhee..ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------LIPASE_SER---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjh A   1 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHALGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260


Chain B from PDB  Type:PROTEIN  Length:260
 aligned with FAEA_ASPNG | O42807 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:260
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
           FAEA_ASPNG    22 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 281
               SCOP domains d2bjhb_ B: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2bjhB00 B:1-260  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhhh..........eeeeeeeee....eeeeeeee....eeeeee....hhhhhhhhh...eee..........eeehhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhh.........eeeeee...hhhhh.hhhhh.....eeeee....hhh.eeee.....hhhhhh.....hhhhhee..ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------LIPASE_SER---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjh B   1 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHALGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260


Chain C from PDB  Type:PROTEIN  Length:260
 aligned with FAEA_ASPNG | O42807 from UniProtKB/Swiss-Prot  Length:281

    Alignment length:260
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
           FAEA_ASPNG    22 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 281
               SCOP domains d2bjhc_ C: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 2bjhC00 C:1-260  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhhhhhh........eeeeee........eeeeee....eeeeee....hhhhhhhhh...eee..........eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhh...hhhhh.eeeeee...hhhhh.hhhhh.....eeeee........eeee.....hhhhhh..........ee..ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------LIPASE_SER---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bjh C   1 ASTQGISEDLYNRLVEMATISQAAYADLCNIPSTIIKGEKIYNAQTDINGWILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHALGASMAALTAAQLSATYDNVRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGVEYWSVDPYSAQNTFVCTGDEVQCCEAQGGQGVNDAHTTYFGMTSGACTW 260
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BJH)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (FAEA_ASPNG | O42807)
molecular function
    GO:0052689    carboxylic ester hydrolase activity    Catalysis of the hydrolysis of a carboxylic ester bond.
    GO:0030248    cellulose binding    Interacting selectively and non-covalently with cellulose.
    GO:0030600    feruloyl esterase activity    Catalysis of the reaction: feruloyl-polysaccharide + H2O = ferulate + polysaccharide.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0016998    cell wall macromolecule catabolic process    The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
    GO:0030245    cellulose catabolic process    The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0045490    pectin catabolic process    The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
    GO:0045493    xylan catabolic process    The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  2bjh
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  FAEA_ASPNG | O42807
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  3.1.1.73
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAEA_ASPNG | O42807: 1usw 1uwc 1uza 2hl6 2ix9

(-) Related Entries Specified in the PDB File

1usw CRYSTAL STRUCTURE OF FERULIC ACID ESTERASE FROM ASPERGILLUS NIGER
1uwc FERULOYL ESTERASE FROM ASPERGILLUS NIGER
1uza CRYSTALLOGRAPHIC STRUCTURE OF A FERULOYL ESTERASE FROM ASPERGILLUS NIGER