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(-) Description

Title :  STRUCTURE OF DRAD INVASIN FROM UROPATHOGENIC ESCHERICHIA COLI
 
Authors :  R. Jedrzejczak, Z. Dauter, M. Dauter, R. Piatek, B. Zalewska, M. Mroz, K B. Nowicki, J. Kur
Date :  06 Sep 05  (Deposition) - 01 Nov 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Homodimer, Beta-Sandwich, Immunoglobulin-Like Fold, Swapped C- Terminal Strands, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Jedrzejczak, Z. Dauter, M. Dauter, R. Piatek, B. Zalewska, M. Mroz, K. Bury, B. Nowicki, J. Kur
Structure Of Drad Invasin From Uropathogenic Escherichia Coli: A Dimer With Swapped Beta-Tails.
Acta Crystallogr. , Sect. D V. 62 157 2006
PubMed-ID: 16421447  |  Reference-DOI: 10.1107/S0907444905036747

(-) Compounds

Molecule 1 - DRAD INVASIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PINVDSYG-C-HIS
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: DRAD INVASIN
    Gene: DRAD
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:50 , ARG A:65 , HOH A:546 , GLY B:99 , ASN B:100BINDING SITE FOR RESIDUE CL A 501
2AC2SOFTWAREASP A:17 , GLY A:99 , ASN A:100 , ALA A:125 , ALA A:126 , GLN B:14 , ASN B:100 , ASP B:102BINDING SITE FOR RESIDUE GOL B 502

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:28 -A:116
2B:28 -B:116

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2AXW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AXW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AXW)

(-) Exons   (0, 0)

(no "Exon" information available for 2AXW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with AFAD_ECOLX | Q47038 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:134
                                                                                                                                                  147             
                                    36        46        56        66        76        86        96       106       116       126       136       146|        -    
           AFAD_ECOLX    27 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE-------------   -
               SCOP domains d2axwa1 A:1-121 Invasin AfaD                                                                                             ------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee............eeeeeeee......eeeeee..ee......eeeeee.....eeeeeee....ee........eeee....eeeeeeee........eeeeeeeeeeeeeeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2axw A   1 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQEKLAAALEHHHHHH 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    


Chain A from PDB  Type:PROTEIN  Length:134
 aligned with Q7BG36_ECOLX | Q7BG36 from UniProtKB/TrEMBL  Length:147

    Alignment length:134
                                                                                                                                                  147             
                                    36        46        56        66        76        86        96       106       116       126       136       146|        -    
         Q7BG36_ECOLX    27 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE-------------   -
               SCOP domains d2axwa1 A:1-121 Invasin AfaD                                                                                             ------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee............eeeeeeee......eeeeee..ee......eeeeee.....eeeeeee....ee........eeee....eeeeeeee........eeeeeeeeeeeeeeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2axw A   1 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQEKLAAALEHHHHHH 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    


Chain B from PDB  Type:PROTEIN  Length:134
 aligned with AFAD_ECOLX | Q47038 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:134
                                                                                                                                                  147             
                                    36        46        56        66        76        86        96       106       116       126       136       146|        -    
           AFAD_ECOLX    27 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE-------------   -
               SCOP domains d2axwb_ B: Invasin AfaD                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......ee....eeeeeeee......eeeeee..ee......eeeeee.....eeeeeee....ee........eeee....eeeeeeee...ee...eeeeeeeeeeeeeeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2axw B   1 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQEKLAAALEHHHHHH 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    


Chain B from PDB  Type:PROTEIN  Length:134
 aligned with Q7BG36_ECOLX | Q7BG36 from UniProtKB/TrEMBL  Length:147

    Alignment length:134
                                                                                                                                                  147             
                                    36        46        56        66        76        86        96       106       116       126       136       146|        -    
         Q7BG36_ECOLX    27 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE-------------   -
               SCOP domains d2axwb_ B: Invasin AfaD                                                                                                                SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......ee....eeeeeeee......eeeeee..ee......eeeeee.....eeeeeee....ee........eeee....eeeeeeee...ee...eeeeeeeeeeeeeeeeee...eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2axw B   1 AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQEKLAAALEHHHHHH 134
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AXW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AXW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2AXW)

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  2axw
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  Q7BG36_ECOLX | Q7BG36
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AFAD_ECOLX | Q47038: 2fvn 2ixq
UniProtKB/TrEMBL
        Q7BG36_ECOLX | Q7BG36: 2ixq

(-) Related Entries Specified in the PDB File

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