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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE NAG ISOMERASE FROM SALMONELLA TYPHIMURIUM
 
Authors :  D. Kumaran, S. Swaminathan, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  25 Jul 05  (Deposition) - 16 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Nag Isomerase, Dimer-Of-Trimers, Renin-Binding Protein, Alpha/Alpha-Fold, T1489, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Kumaran, S. Swaminathan
Crystal Structure Of Putative Nag Isomerase From Salmonella Typhimurium
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NAG ISOMERASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: YIHS
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 602

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 54)

Asymmetric/Biological Unit (1, 54)
No.NameCountTypeFull Name
1MSE54Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2AFA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2AFA)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:399 -Pro A:400
2Ala B:399 -Pro B:400
3Ala C:399 -Pro C:400
4Ala D:399 -Pro D:400
5Ala E:399 -Pro E:400
6Ala F:399 -Pro F:400

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2AFA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2AFA)

(-) Exons   (0, 0)

(no "Exon" information available for 2AFA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains -d2afaa1 A:4-415 Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..............ee....eee..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhh.....ee........................hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa A   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains d2afab_ B: Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.............eee..eeee..eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......ee........................hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa B   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains d2afac_ C: Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..............ee....eee..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhh......ee........................hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa C   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains d2afad_ D: Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.............ee....eee..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhh......ee........................hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa D   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains d2afae_ E: Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..............eee..eeee..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhh......ee........................hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa E   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:408
 aligned with SQUS_SALTY | Q8ZKT7 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  
           SQUS_SALTY     1 MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 412
               SCOP domains d2afaf_ F: Putative NAG isomerase YihS                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh..ee..ee.........hhhhheehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.............eee..eeee..eehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhee....ee..ee..........eehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhh.....ee........................hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......................eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee........----.......hhhhhhhhhh....hhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2afa F   3 LKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEmGTHLWITARmLHVYSVAASmGRPGAYDLVDHGIKAmNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQmCLESWDEAFSQTEDYRGGNANmHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLmLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAmGTAYALYTLTDDSQYEEWYQKWWDYCIKYLmDYENGSWWQELDADNKVTT----GKQDIYHLLHCLVIPRLPLAPGLAPAVAAGLLDINA 415
                                    12        22        32        42     |  52     |  62     |  72        82 |      92       102       112       122       132       142       152  |    162       172    |  182       192       202       212       222       232       242       252     | 262       272       282       292       302 ||    313       323 |     333       343       353  |    363       373 |    |383       393       403       413  
                                                                        48-MSE    58-MSE    68-MSE          84-MSE                                                                155-MSE               177-MSE                                                                          258-MSE                                       304|                325-MSE                        356-MSE            375  380                                   
                                                                                                                                                                                                                                                                                                                                        306
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2AFA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2AFA)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (SQUS_SALTY | Q8ZKT7)
molecular function
    GO:0050121    N-acylglucosamine 2-epimerase activity    Catalysis of the reaction: N-acyl-D-glucosamine = N-acyl-D-mannosamine.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0061593    sulfoquinovose isomerase activity    Catalysis of the reaction sulfoquinovose = 6-deoxy-6-sulfofructose.
biological process
    GO:1902777    6-sulfoquinovose(1-) catabolic process    The chemical reactions and pathways resulting in the breakdown of 6-sulfoquinovose(1-).
    GO:0006044    N-acetylglucosamine metabolic process    The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein.

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    Ala A:399 - Pro A:400   [ RasMol ]  
    Ala B:399 - Pro B:400   [ RasMol ]  
    Ala C:399 - Pro C:400   [ RasMol ]  
    Ala D:399 - Pro D:400   [ RasMol ]  
    Ala E:399 - Pro E:400   [ RasMol ]  
    Ala F:399 - Pro F:400   [ RasMol ]  
 

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  2afa
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  SQUS_SALTY | Q8ZKT7
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 Related Entries

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        SQUS_SALTY | Q8ZKT7: 2zbl

(-) Related Entries Specified in the PDB File

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