2AD1 - JenaLib

Title :   HUMAN SULFOTRANSFERASE SULT1C2

Authors :   A. Dong, L. Dombrovski, P. Loppnau, A. M. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, A. Bochkarev, A. N. Plotnikov, Structural Genomics Consortium (Sgc)

Date :   19 Jul 05 (Deposition) - 02 Aug 05 (Release) - 09 Dec 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   X-Ray Crystallography; Sulfate Conjugation, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Allali-Hassani, P. W. Pan, L. Dombrovski, R. Najmanovich, W. Tempel, A. Dong, P. Loppnau, F. Martin, J. Thornton, J. Thonton, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, M. Vedadi, C. H. Arrowsmith
Structural And Chemical Profiling Of The Human Cytosolic Sulfotransferases.
Plos Biol. V. 5 E97 2007
PubMed-ID: 17425406 | Reference-DOI: 10.1371/JOURNAL.PBIO.0050097
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (0, 0)

Exons (7, 7)

Asymmetric/Biological Unit (7, 7)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000272452	1b	ENSE00001939798	chr2:108994468-108994962	495	ST1C4_HUMAN	1-57	57	1	A:8-51	44
1.2a	ENST00000272452	2a	ENSE00000963464	chr2:108998218-108998343	126	ST1C4_HUMAN	57-99	43	1	A:51-93 (gaps)	43
1.2c	ENST00000272452	2c	ENSE00000963465	chr2:108998841-108998938	98	ST1C4_HUMAN	99-131	33	1	A:93-125	33
1.3	ENST00000272452	3	ENSE00000963466	chr2:108999549-108999675	127	ST1C4_HUMAN	132-174	43	1	A:126-168	43
1.4	ENST00000272452	4	ENSE00001378859	chr2:108999872-108999966	95	ST1C4_HUMAN	174-205	32	1	A:168-199	32
1.5	ENST00000272452	5	ENSE00000963468	chr2:109002648-109002828	181	ST1C4_HUMAN	206-266	61	1	A:200-228	29
1.6c	ENST00000272452	6c	ENSE00001318272	chr2:109003776-109004513	738	ST1C4_HUMAN	266-302	37	1	A:262-294	33

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:244
 aligned with ST1C4_HUMAN | O75897 from UniProtKB/Swiss-Prot  Length:302

    Alignment length:287
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       
          ST1C4_HUMAN    14 TKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHF 300
               SCOP domains d2ad1a_ A: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2ad1A00 A:8-294 P-loop containing nucleotide triphosphate hydrolas      es                                                                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..eeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh........------........----hhhhhhhh.....eeee..hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh......hhhhhhhhhh---------------------------------.hhhhhh.hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------M---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: A:8-51 UniProt: 1-57        -----------------------------------------Exon 1.2c  PDB: A:93-125         Exon 1.3  PDB: A:126-168 UniProt: 132-174  -------------------------------Exon 1.5  PDB: A:200-228 UniProt: 206-266 [INCOMPLETE]       ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------Exon 1.2a  PDB: A:51-93 (gaps)             --------------------------------------------------------------------------Exon 1.4  PDB: A:168-199        ------------------------------------------------------------Exon 1.6c  PDB: A:262-294           Transcript 1 (2)
                 2ad1 A   8 TKRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKR------FPFLEMKI----SGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYT---------------------------------VGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHF 294
                                    17        27        37        47        57        67     |   -  |     87    |   97       107       117       127       137       147       157       167       177       187       197       207       217       227|        -         -         -    |  267       277       287       
                                                                                            73     80     87   92                                                                                                                                     228                               262

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ST1C4_HUMAN | O75897)

molecular function
	GO:0004062	aryl sulfotransferase activity	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
	GO:0008146	sulfotransferase activity	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0050427	3'-phosphoadenosine 5'-phosphosulfate metabolic process	The chemical reactions and pathways involving 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.
	GO:0051923	sulfation	The addition of a sulfate group to a molecule.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	Cis Peptide Bonds
		Ser A:102 - Pro A:103	[ RasMol ]

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