2GWH - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HUMAN SULFOTRANFERASE SULT1C2 IN COMPLEX WITH PAP AND PENTACHLOROPHENOL

Authors :   W. Tempel, P. W. Pan, L. Dombrovski, A. Allali-Hassani, M. Vedadi, P. Lo J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkare A. N. Plotnikov, Structural Genomics Consortium (Sgc)

Date :   04 May 06 (Deposition) - 16 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Sulfotransferase, Sulfate Conjugation, Pentachlorophenol, Pap, Pesticide, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Allali-Hassani, P. W. Pan, L. Dombrovski, R. Najmanovich, W. Tempel, A. Dong, P. Loppnau, F. Martin, J. Thornton, J. Thonton, A. M. Edwards, A. Bochkarev, A. N. Plotnikov, M. Vedadi, C. H. Arrowsmith
Structural And Chemical Profiling Of The Human Cytosolic Sulfotransferases.
Plos Biol. V. 5 E97 2007
PubMed-ID: 17425406 | Reference-DOI: 10.1371/JOURNAL.PBIO.0050097

Molecule 1 - SULFOTRANSFERASE 1C2
	Chains	:	A, B
	EC Number	:	2.8.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A-LIC
	Expression System Strain	:	L21(DE3) CODON+
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SULT1C2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SULT1C, SULT1C#2

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 11)

No.	Name	Count	Type	Full Name
1	A3P	2	Ligand/Ion	ADENOSINE-3'-5'-DIPHOSPHATE
2	PCI	3	Ligand/Ion	PENTACHLOROPHENOL
3	UNX	6	Ligand/Ion	UNKNOWN ATOM OR ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:55 , ALA A:56 , GLY A:57 , THR A:58 , THR A:59 , TRP A:60 , ARG A:137 , SER A:145 , TYR A:200 , THR A:234 , SER A:235 , PHE A:236 , MET A:239 , PHE A:262 , MET A:263 , ARG A:264 , LYS A:265 , GLY A:266 , HOH A:1016 , HOH A:1033 , HOH A:1076 , HOH A:1119 , HOH A:1120 , HOH A:1124	BINDING SITE FOR RESIDUE A3P A 401
02	AC2	SOFTWARE	ILE A:93 , LYS A:113 , HIS A:115 , PHE A:149 , ASN A:153 , LEU A:156 , TRP A:176 , TYR A:247 , MET A:255 , HOH A:1120	BINDING SITE FOR RESIDUE PCI A 402
03	AC3	SOFTWARE	LYS B:55 , ALA B:56 , GLY B:57 , THR B:58 , THR B:59 , TRP B:60 , ARG B:137 , SER B:145 , TYR B:200 , THR B:234 , SER B:235 , PHE B:236 , MET B:239 , PHE B:262 , MET B:263 , ARG B:264 , LYS B:265 , GLY B:266 , HOH B:1015 , HOH B:1022 , HOH B:1038 , HOH B:1072 , HOH B:1131	BINDING SITE FOR RESIDUE A3P B 401
04	AC4	SOFTWARE	PHE B:88 , ILE B:93 , LYS B:113 , HIS B:115 , ASN B:153 , TRP B:176 , TYR B:247 , MET B:255 , HOH B:1038	BINDING SITE FOR RESIDUE PCI B 402
05	AC5	SOFTWARE	LYS B:225 , ASP B:228 , LYS B:229 , HIS B:232 , TYR B:233	BINDING SITE FOR RESIDUE PCI B 501
06	AC6	SOFTWARE	ARG B:194	BINDING SITE FOR RESIDUE UNX B 1001
07	AC7	SOFTWARE	GLN B:301 , PHE B:302	BINDING SITE FOR RESIDUE UNX B 1002
08	AC8	SOFTWARE	ASP A:284 , LYS A:288	BINDING SITE FOR RESIDUE UNX A 1003
09	AC9	SOFTWARE	TRP A:187 , THR A:294	BINDING SITE FOR RESIDUE UNX A 1004
10	BC1	SOFTWARE	GLU B:285 , LYS B:288 , HOH B:1133	BINDING SITE FOR RESIDUE UNX B 1005
11	BC2	SOFTWARE	LYS A:131 , ARG A:194	BINDING SITE FOR RESIDUE UNX A 1006

Asymmetric/Biological Unit

No.	Residues
1	B:32	-	B:32

Asymmetric/Biological Unit

No.	Residues
1	Ser A:108	-	Pro A:109
2	Ser B:108	-	Pro B:109

Asymmetric/Biological Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_061889	I	68	M	ST1C4_HUMAN	Polymorphism	41322445	A/B	I	68	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2GWH)

Asymmetric/Biological Unit (7, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000272452	1b	ENSE00001939798	chr2:108994468-108994962	495	ST1C4_HUMAN	1-57	57	2	A:16-57 B:15-57	42 43
1.2a	ENST00000272452	2a	ENSE00000963464	chr2:108998218-108998343	126	ST1C4_HUMAN	57-99	43	2	A:57-99 B:57-99	43 43
1.2c	ENST00000272452	2c	ENSE00000963465	chr2:108998841-108998938	98	ST1C4_HUMAN	99-131	33	2	A:99-131 B:99-131	33 33
1.3	ENST00000272452	3	ENSE00000963466	chr2:108999549-108999675	127	ST1C4_HUMAN	132-174	43	2	A:132-174 B:132-174	43 43
1.4	ENST00000272452	4	ENSE00001378859	chr2:108999872-108999966	95	ST1C4_HUMAN	174-205	32	2	A:174-205 B:174-205	32 32
1.5	ENST00000272452	5	ENSE00000963468	chr2:109002648-109002828	181	ST1C4_HUMAN	206-266	61	2	A:206-266 B:206-266	61 61
1.6c	ENST00000272452	6c	ENSE00001318272	chr2:109003776-109004513	738	ST1C4_HUMAN	266-302	37	2	A:266-302 (gaps) B:266-302	37 37

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:285
 aligned with ST1C4_HUMAN | O75897 from UniProtKB/Swiss-Prot  Length:302

    Alignment length:287
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       
          ST1C4_HUMAN    16 RLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQF 302
               SCOP domains d2gwha_ A: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2gwhA00 A:16-302 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeehhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhh..hhhhhh..hhhhhh.....ee...eehhhhhhhh....eeee..hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...........................hhhhhh.hhhhhhhhhhhhhhhh--hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: A:16-57 UniProt: 1-57     -----------------------------------------Exon 1.2c  PDB: A:99-131         Exon 1.3  PDB: A:132-174 UniProt: 132-174  -------------------------------Exon 1.5  PDB: A:206-266 UniProt: 206-266                    ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2a  PDB: A:57-99 UniProt: 57-99     --------------------------------------------------------------------------Exon 1.4  PDB: A:174-205        ------------------------------------------------------------Exon 1.6c  PDB: A:266-302 (gaps)      Transcript 1 (2)
                 2gwh A  16 RLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKM--TRLTFHFQF 302
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285     | 295       
                                                                                                                                                                                                                                                                                                             291  |        
                                                                                                                                                                                                                                                                                                                294

Chain B from PDB  Type:PROTEIN  Length:288
 aligned with ST1C4_HUMAN | O75897 from UniProtKB/Swiss-Prot  Length:302

    Alignment length:288
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294        
          ST1C4_HUMAN    15 KRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQF 302
               SCOP domains d2gwhb_ B: automated matches                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2gwhB00 B:15-302 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eee......hhhhhhh.......eeeee....hhhhhhhhhhhhhh..hhhhhh..hhhhhh.....ee...eehhhhhhhh....eeee..hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..........................hhhhhh.hhhhhhhhhhhhhhhh...hhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------M------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1b  PDB: B:15-57 UniProt: 1-57      -----------------------------------------Exon 1.2c  PDB: B:99-131         Exon 1.3  PDB: B:132-174 UniProt: 132-174  -------------------------------Exon 1.5  PDB: B:206-266 UniProt: 206-266                    ------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.2a  PDB: B:57-99 UniProt: 57-99     --------------------------------------------------------------------------Exon 1.4  PDB: B:174-205        ------------------------------------------------------------Exon 1.6c  PDB: B:266-302             Transcript 1 (2)
                 2gwh B  15 KRLSVNYVKGILQPTDTCDIWDKIWNFQAKPDDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFLEMKIPSLGSGLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFLAGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSISPFMRKGAVGDWKKHFTVAQNERFDEDYKKKMTDTRLTFHFQF 302
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: PAPS sulfotransferase (54)

Protein domain: automated matches (23)

Human (Homo sapiens) [TaxId: 9606] (11)

1a	d2gwha_	A:
1b	d2gwhb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Human (Homo sapiens) (413)

1a	2gwhA00	A:16-302
1b	2gwhB00	B:15-302

(no "Pfam Domain" information available for 2GWH)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ST1C4_HUMAN | O75897)

molecular function
	GO:0004062	aryl sulfotransferase activity	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
	GO:0008146	sulfotransferase activity	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0050427	3'-phosphoadenosine 5'-phosphosulfate metabolic process	The chemical reactions and pathways involving 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.
	GO:0051923	sulfation	The addition of a sulfate group to a molecule.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ser A:108 - Pro A:109	[ RasMol ]
		Ser B:108 - Pro B:109	[ RasMol ]

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	2gwh
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	ST1C4_HUMAN \| O75897	:	2ad1

2ad1	MOLECULAR REPLACEMENT MODEL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

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Exons (7, 14)

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