2ZVP - JenaLib

Title :   CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAP AND P-NITROPHENOL

Authors :   T. Teramoto, Y. Sakakibara, M. -C. Liu, M. Suiko, M. Kimura, Y. Kakuta

Date :   14 Nov 08 (Deposition) - 30 Dec 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym./Biol. Unit : X

Keywords :   Sult1D1, Sulfotransferase, P-Nitrophenol, Sulfonation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Teramoto, Y. Sakakibara, M. -C. Liu, M. Suiko, M. Kimura, Y. Kakuta
Structural Basis For The Broad Range Substrate Specificity Of A Novel Mouse Cytosolic Sulfotransferase--Msult1D1
Biochem. Biophys. Res. Commun. V. 379 76 2009
PubMed-ID: 19073143 | Reference-DOI: 10.1016/J.BBRC.2008.12.013

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS X:48 , SER X:49 , GLY X:50 , THR X:51 , THR X:52 , TRP X:53 , ARG X:130 , SER X:138 , TYR X:193 , SER X:227 , SER X:228 , PHE X:229 , MET X:232 , PHE X:255 , MET X:256 , ARG X:257 , LYS X:258 , GLY X:259 , HOH X:2004 , HOH X:2006 , HOH X:2010 , HOH X:2016 , HOH X:2017 , HOH X:2057	BINDING SITE FOR RESIDUE A3P X1101
2	AC2	SOFTWARE	PHE X:21 , PHE X:81 , LYS X:106 , HIS X:108 , PHE X:142 , HIS X:149 , MET X:248 , NPO X:1202 , HOH X:2010 , HOH X:2036	BINDING SITE FOR RESIDUE NPO X1201
3	AC3	SOFTWARE	TYR X:76 , PHE X:81 , LEU X:84 , ILE X:89 , MET X:243 , GLU X:247 , NPO X:1201 , HOH X:2003 , HOH X:2031	BINDING SITE FOR RESIDUE NPO X1202
4	AC4	SOFTWARE	LYS X:209 , GLU X:212 , LYS X:213 , THR X:242 , HOH X:2104	BINDING SITE FOR RESIDUE GOL X1301

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain X from PDB  Type:PROTEIN  Length:289
 aligned with ST1D1_MOUSE | Q3UZZ6 from UniProtKB/Swiss-Prot  Length:295

    Alignment length:289
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284         
          ST1D1_MOUSE     5 LDVFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKEEMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEDSTLKFRS 293
               SCOP domains d2zvpx_ X: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2zvpX00 X:5-293 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee..eeehhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhh....hhhhh.hhhhhh.....ee...eehhhhhhh.....eeee..hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh............................hhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zvp X   5 LDVFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKEEMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEDSTLKFRS 293
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

Chain X (ST1D1_MOUSE | Q3UZZ6)

molecular function
	GO:0004062	aryl sulfotransferase activity	Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
	GO:0008146	sulfotransferase activity	Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006584	catecholamine metabolic process	The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0000103	sulfate assimilation	The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
	GO:0051923	sulfation	The addition of a sulfate group to a molecule.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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		Ser X:101 - Pro X:102	[ RasMol ]

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