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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE CYTOSOLIC SULFOTRANSFERASE MSULT1D1 COMPLEX WITH PAPS
 
Authors :  T. Teramoto, Y. Sakakibara, M. -C. Liu, M. Suiko, M. Kimura, Y. Kakuta
Date :  29 Jan 09  (Deposition) - 21 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  X
Keywords :  Sult1D1, Sult, Sulfotransferase, Paps, Sulfonation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Teramoto, Y. Sakakibara, M. -C. Liu, M. Suiko, M. Kimura, Y. Kakuta
Snapshot Of A Michaelis Complex In A Sulfuryl Transfer Reaction: Crystal Structure Of A Mouse Sulfotransferase, Msult1D1, Complexed With Donor Substrate And Accepter Substrate
Biochem. Biophys. Res. Commun. V. 383 83 2009
PubMed-ID: 19344693  |  Reference-DOI: 10.1016/J.BBRC.2009.03.146

(-) Compounds

Molecule 1 - TYROSINE-ESTER SULFOTRANSFERASE
    Chains: X
    EC Number: 2.8.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-2TK
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-295
    Gene: SULT1D1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: CYTOSOLIC SULFOTRANSFERASE, MSULT1D1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PPS1Ligand/Ion3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO X:47 , LYS X:48 , SER X:49 , GLY X:50 , THR X:51 , THR X:52 , TRP X:53 , LYS X:106 , HIS X:108 , ARG X:130 , SER X:138 , PHE X:142 , TYR X:193 , SER X:227 , SER X:228 , PHE X:229 , MET X:232 , PHE X:255 , MET X:256 , ARG X:257 , LYS X:258 , GLY X:259 , HOH X:2021 , HOH X:2024 , HOH X:2040 , HOH X:2042 , HOH X:2056 , HOH X:2091 , HOH X:2154BINDING SITE FOR RESIDUE PPS X 501
2AC2SOFTWARETRP X:28 , GLU X:32 , LYS X:222 , HOH X:2032 , HOH X:2169BINDING SITE FOR RESIDUE GOL X 1001
3AC3SOFTWAREARG X:9 , GLU X:151 , PRO X:152 , VAL X:252BINDING SITE FOR RESIDUE GOL X 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZYT)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser X:101 -Pro X:102

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZYT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZYT)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZYT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:291
 aligned with ST1D1_MOUSE | Q3UZZ6 from UniProtKB/Swiss-Prot  Length:295

    Alignment length:291
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293 
          ST1D1_MOUSE     4 KLDVFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKEEMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEDSTLKFRSE 294
               SCOP domains d2zytx_ X: automated matches                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2zytX00 X:4-294 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee..eeehhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhh....hhhhh.hhhhhh.....ee...eehhhhhhh.....eeee..hhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........................hhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zyt X   4 KLDVFRRELVDVEGIPLFWSIAEHWSQVESFEARPDDILISTYPKSGTTWVSEILDLIYNNGDAEKCKRDAIYKRVPFMELIIPGITNGVEMLNNMPSPRIVKTHLPVQLLPSSFWKNDCKIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLEKFMAGQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKILYHSSFSVMKENPSANYTTMMKEEMDHSVSPFMRKGISGDWKNQFTVAQYEKFEEDYVKKMEDSTLKFRSE 294
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ZYT)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain X   (ST1D1_MOUSE | Q3UZZ6)
molecular function
    GO:0004062    aryl sulfotransferase activity    Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
    GO:0008146    sulfotransferase activity    Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006584    catecholamine metabolic process    The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0000103    sulfate assimilation    The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
    GO:0051923    sulfation    The addition of a sulfate group to a molecule.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ST1D1_MOUSE | Q3UZZ6: 2zpt 2zvp 2zvq 2zyu 2zyv 2zyw

(-) Related Entries Specified in the PDB File

2zpt THE SAME PROTEIN COMPLEXED WITH PAP
2zvp THE SAME PROTEIN COMPLEXED WITH PAP AND P-NITROPHENOL
2zvq THE SAME PROTEIN COMPLEXED WITH PAP AND ALPHA-NAPHTHOL
2zyu THE SAME PROTEIN COMPLEXED WITH PAPS AND P- NITROPHENYLSULFATE
2zyv THE SAME PROTEIN COMPLEXED WITH PAPS/PAP AND P-NITROPHENOL
2zyw THE SAME PROTEIN COMPLEXED WITH PAP AND P-NITROPHENOL, OBTAINED BY TWO-STEP SOAKING METHOD