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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF H.PYLORI CLPP IN COMPLEX WITH THE PEPTIDE NVLGFTQ
 
Authors :  D. Y. Kim, K. K. Kim
Date :  02 Apr 08  (Deposition) - 22 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Keywords :  Peptide Substrate, Cytoplasm, Hydrolase, Protease, Serine Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Y. Kim, K. K. Kim
The Structural Basis For The Activation And Peptide Recognition Of Bacterial Clpp
J. Mol. Biol. V. 379 760 2008
PubMed-ID: 18468623  |  Reference-DOI: 10.1016/J.JMB.2008.04.036
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    EC Number: 3.4.21.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET_22B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CLPP
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: ENDOPEPTIDASE CLP
 
Molecule 2 - A PEPTIDE SUBSTRATE-NVLGFTQ
    Chains: O, P, Q, T, U, V, W, X
    Engineered: YES
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES
 
Molecule 3 - A PEPTIDE SUBSTRATE-NVLGFTQ FOR CHAIN R AND S
    Chains: R, S
    Engineered: YES
    Other Details: CHAIN R AND S ARE SAME POLYMER WITH CHAIN O, P, Q, T, U, V, W AND X. BUT AUTHORS WERE UNABLE TO ASSIGN SIDE CHAINS DUE TO POOR ELECTRONIC DENSITY.
    Other Details - Source: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTUVWX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1UNK7Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 2ZL2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZL2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZL2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZL2)

(-) PROSITE Motifs  (2, 28)

Asymmetric/Biological Unit (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLP_PROTEASE_SERPS00381 Endopeptidase Clp serine active site.CLPP_HELPY91-102
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:91-102
B:91-102
C:91-102
D:91-102
E:91-102
F:91-102
G:91-102
H:91-102
I:91-102
J:91-102
K:91-102
L:91-102
M:91-102
N:91-102
2CLP_PROTEASE_HISPS00382 Endopeptidase Clp histidine active site.CLPP_HELPY113-126
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:113-126
B:113-126
C:113-126
D:113-126
E:113-126
F:113-126
G:113-126
H:113-126
I:113-126
J:113-126
K:113-126
L:113-126
M:113-126
N:113-126

(-) Exons   (0, 0)

(no "Exon" information available for 2ZL2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:174
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
               SCOP domains d2zl2a_ A: Clp protease, ClpP subunit                                                                                                                                          SCOP domains
               CATH domains 2zl2A00 A:20-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zl2 A  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2b_ B: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2B00 B:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...eeeee...hhhhhhhhhhhhhhhhhh.....eeeeeee..eehhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee.....eee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 B  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain C from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:174
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
               SCOP domains d2zl2c_ C: Clp protease, ClpP subunit                                                                                                                                          SCOP domains
               CATH domains 2zl2C00 C:20-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh......eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeeehhhhhhh....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2zl2 C  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQK 193
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189    


Chain D from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2d_ D: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2D00 D:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh...eeee...hhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhh.......eeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 D  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain E from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2e_ E: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2E00 E:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhh.....eeeeeeeeeehhhhhhhhh......ee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh...eeeehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 E  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain F from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2f_ F: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2F00 F:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeeeehhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 F  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain G from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2g_ G: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2G00 G:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.........hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 G  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain H from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2h_ H: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2H00 H:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhh.....eeeeeee..eehhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 H  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain I from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2i_ I: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2I00 I:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeehhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 I  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain J from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2j_ J: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2J00 J:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh.......ee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeehhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 J  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain K from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2k_ K: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2K00 K:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...eeehhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 K  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain L from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2l_ L: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2L00 L:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeeee...hhhhhhhhhhhhhhhhh......eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 L  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain M from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2m_ M: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2M00 M:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee..eehhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 M  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain N from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_HELPY | P56156 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:173
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   
           CLPP_HELPY    20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
               SCOP domains d2zl2n_ N: Clp protease, ClpP subunit                                                                                                                                         SCOP domains
               CATH domains 2zl2N00 N:20-192 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                     CATH domains
           Pfam domains (1) CLP_protease-2zl2N01 N:20-192                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) CLP_protease-2zl2N02 N:20-192                                                                                                                                                 Pfam domains (2)
           Pfam domains (3) CLP_protease-2zl2N03 N:20-192                                                                                                                                                 Pfam domains (3)
           Pfam domains (4) CLP_protease-2zl2N04 N:20-192                                                                                                                                                 Pfam domains (4)
           Pfam domains (5) CLP_protease-2zl2N05 N:20-192                                                                                                                                                 Pfam domains (5)
           Pfam domains (6) CLP_protease-2zl2N06 N:20-192                                                                                                                                                 Pfam domains (6)
           Pfam domains (7) CLP_protease-2zl2N07 N:20-192                                                                                                                                                 Pfam domains (7)
           Pfam domains (8) CLP_protease-2zl2N08 N:20-192                                                                                                                                                 Pfam domains (8)
           Pfam domains (9) CLP_protease-2zl2N09 N:20-192                                                                                                                                                 Pfam domains (9)
          Pfam domains (10) CLP_protease-2zl2N10 N:20-192                                                                                                                                                 Pfam domains (10)
          Pfam domains (11) CLP_protease-2zl2N11 N:20-192                                                                                                                                                 Pfam domains (11)
          Pfam domains (12) CLP_protease-2zl2N12 N:20-192                                                                                                                                                 Pfam domains (12)
          Pfam domains (13) CLP_protease-2zl2N13 N:20-192                                                                                                                                                 Pfam domains (13)
          Pfam domains (14) CLP_protease-2zl2N14 N:20-192                                                                                                                                                 Pfam domains (14)
         Sec.struct. author hhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee..eehhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...eeeehhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zl2 N  20 DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQGQASDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDTDRDFYMSAKEAKEYGLIDKVLQ 192
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189   


Chain O from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 O   1 NVLG   4


Chain P from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author ..ee Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 P   4 GFTQ   7


Chain Q from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 Q   1 NVLG   4


Chain R from PDB  Type:PROTEIN  Length:3
                                   
               SCOP domains --- SCOP domains
               CATH domains --- CATH domains
               Pfam domains --- Pfam domains
         Sec.struct. author ... Sec.struct. author
                 SAPs(SNPs) --- SAPs(SNPs)
                    PROSITE --- PROSITE
                 Transcript --- Transcript
                 2zl2 R   1 xxx   3
                            |||
                            1-UNK
                             2-UNK
                              3-UNK


Chain S from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 S   1 xxxx   4
                            ||||
                            ||||
                            1-UNK
                             2-UNK
                              3-UNK
                               4-UNK


Chain T from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 T   1 NVLG   4


Chain U from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author ..ee Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 U   2 VLGF   5


Chain V from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 V   1 NVLG   4


Chain W from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author ..ee Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 W   1 NVLG   4


Chain X from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author ..ee Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2zl2 X   1 NVLG   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Clan: ClpP_crotonase (88)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (CLPP_HELPY | P56156)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  2zl2
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  CLPP_HELPY | P56156
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP_HELPY | P56156: 2zl0 2zl3 2zl4

(-) Related Entries Specified in the PDB File

2zl0 2zl2 2zl3