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(-) Description

Title :  T. TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSAMINE-6-PHOSPHATE
 
Authors :  D. J. Klein, S. R. Wilkinson, M. D. Been, A. R. Ferre-D'Amare
Date :  15 Aug 07  (Deposition) - 04 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ribozyme, Riboswitch, Glucose-6-Phosphate, Glucosamine-6- Phosphate, Dna, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Klein, S. R. Wilkinson, M. D. Been, A. R. Ferre-D'Amare
Requirement Of Helix P2. 2 And Nucleotide G1 For Positioning The Cleavage Site And Cofactor Of The Glms Ribozyme
J. Mol. Biol. V. 373 178 2007
PubMed-ID: 17804015  |  Reference-DOI: 10.1016/J.JMB.2007.07.062
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLMS RIBOZYME SUBSTRATE RNA
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - GLMS RIBOZYME RNA
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1GLP1Ligand/IonGLUCOSAMINE 6-PHOSPHATE
2MG9Ligand/IonMAGNESIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:430 , HOH A:541 , HOH A:577 , HOH A:579 , HOH B:549BINDING SITE FOR RESIDUE GLP A 201
2AC2SOFTWAREHOH A:401 , HOH B:402 , HOH B:465BINDING SITE FOR RESIDUE MG B 301
3AC4SOFTWAREHOH B:443BINDING SITE FOR RESIDUE MG B 303
4AC5SOFTWAREHOH B:411 , HOH B:492 , HOH B:493 , HOH B:494 , HOH B:544BINDING SITE FOR RESIDUE MG B 304
5AC6SOFTWAREHOH B:520BINDING SITE FOR RESIDUE MG B 305
6AC7SOFTWAREHOH A:541 , HOH B:576BINDING SITE FOR RESIDUE MG B 306
7AC8SOFTWAREHOH A:577BINDING SITE FOR RESIDUE MG B 307
8AC9SOFTWAREHOH B:425 , HOH B:508BINDING SITE FOR RESIDUE MG B 308
9BC1SOFTWAREHOH B:428 , HOH B:581BINDING SITE FOR RESIDUE MG B 309

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Z75)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Z75)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2Z75)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA/RNA  Length:21
                                                     
                 2z75 A  -1 AGCGCCUGGACUUAAAGCCAU  20
                            ||       9        19 
                            ||                   
                           -1|                   
                             1                   


Chain B from PDB  Type:DNA/RNA  Length:123
                                                                                                                                                           
                 2z75 B  23 GGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA 145
                                    32        42        52        62        72        82        92       102       112       122       132       142
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Z75)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Z75)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  2z75
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