2YND - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A PYRAZOLE SULPHONAMIDE INHIBITOR.

Authors :   M. H. Wright, B. Clough, M. D. Rackham, J. A. Brannigan, M. Grainger, A. R. Bottrill, W. P. Heal, M. Broncel, R. A. Serwa, D. Mann, R. J. Leathe A. J. Wilkinson, A. A. Holder, E. W. Tate

Date :   13 Oct 12 (Deposition) - 15 Jan 14 (Release) - 05 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Transferase, Myristoylation, Malaria, Pyrazole Sulphonamide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. H. Wright, B. Clough, M. D. Rackham, K. Rangachari, J. A. Brannigan, M. Grainger, D. K. Moss, A. R. Bottrill, W. P. Heal, M. Broncel, R. A. Serwa, D. Brady, D. Mann, R. J. Leatherbarrow, R. Tewari, A. J. Wilkinson, A. A. Holder, E. W. Tate
Validation Of N-Myristoyltransferase As An Antimalarial Drug Target Using An Integrated Chemical Biology Approach.
Nat. Chem. V. 6 112 2014
PubMed-ID: 24451586 | Reference-DOI: 10.1038/NCHEM.1836

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
	Chains	:	A, B, C
	EC Number	:	2.3.1.97
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYSS
	Expression System Vector	:	PET28 DERIVATIVE
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 26-410
	Organism Scientific	:	PLASMODIUM VIVAX
	Organism Taxid	:	5855

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 16)

No.	Name	Count	Type	Full Name
1	646	3	Ligand/Ion	2,6-DICHLORO-4-(2-PIPERAZIN-1-YLPYRIDIN-4-YL)-N-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE
2	CL	3	Ligand/Ion	CHLORIDE ION
3	DMS	3	Ligand/Ion	DIMETHYL SULFOXIDE
4	MG	3	Ligand/Ion	MAGNESIUM ION
5	NHW	3	Ligand/Ion	2-OXOPENTADECYL-COA
6	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	646	1	Ligand/Ion	2,6-DICHLORO-4-(2-PIPERAZIN-1-YLPYRIDIN-4-YL)-N-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NHW	1	Ligand/Ion	2-OXOPENTADECYL-COA
6	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	646	1	Ligand/Ion	2,6-DICHLORO-4-(2-PIPERAZIN-1-YLPYRIDIN-4-YL)-N-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NHW	1	Ligand/Ion	2-OXOPENTADECYL-COA
6	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 3)

No.	Name	Count	Type	Full Name
1	646	1	Ligand/Ion	2,6-DICHLORO-4-(2-PIPERAZIN-1-YLPYRIDIN-4-YL)-N-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)BENZENESULFONAMIDE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NHW	1	Ligand/Ion	2-OXOPENTADECYL-COA
6	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:159 , PHE A:281 , TRP A:289 , HOH A:2402	BINDING SITE FOR RESIDUE DMS A 999
02	AC2	SOFTWARE	TYR A:28 , LYS A:29 , PHE A:30 , TRP A:31 , ASN A:94 , TYR A:95 , VAL A:96 , ASN A:161 , PHE A:162 , LEU A:163 , CYS A:164 , VAL A:165 , ARG A:170 , SER A:171 , LYS A:172 , ARG A:173 , LEU A:174 , ALA A:175 , PRO A:176 , THR A:183 , ILE A:186 , TRP A:192 , TYR A:196 , THR A:197 , LEU A:202 , TYR A:393 , 646 A:1001 , MG A:1415 , HOH A:2001 , HOH A:2231 , HOH A:2236 , HOH A:2462 , HOH A:2463 , HOH A:2464 , HOH A:2465 , HOH A:2466 , HOH A:2467	BINDING SITE FOR RESIDUE NHW A1000
03	AC3	SOFTWARE	VAL A:96 , ASP A:98 , PHE A:103 , PHE A:105 , TYR A:107 , GLY A:199 , TYR A:211 , HIS A:213 , PHE A:226 , SER A:319 , LEU A:330 , TYR A:334 , ASN A:365 , LEU A:388 , LEU A:410 , NHW A:1000 , HOH A:2150 , HOH A:2251 , HOH A:2270	BINDING SITE FOR RESIDUE 646 A1001
04	AC4	SOFTWARE	GLU B:159 , PHE B:281 , TRP B:289 , ILE B:407 , HOH B:2181 , HOH B:2363	BINDING SITE FOR RESIDUE DMS B 999
05	AC5	SOFTWARE	TYR B:28 , LYS B:29 , PHE B:30 , TRP B:31 , ASN B:94 , TYR B:95 , ASN B:161 , PHE B:162 , LEU B:163 , CYS B:164 , VAL B:165 , ARG B:170 , SER B:171 , LYS B:172 , ARG B:173 , LEU B:174 , ALA B:175 , PRO B:176 , THR B:183 , TRP B:192 , GLN B:193 , ALA B:194 , THR B:197 , LEU B:202 , TYR B:393 , 646 B:1001 , MG B:1414 , HOH B:2002 , HOH B:2003 , HOH B:2207 , HOH B:2212 , HOH B:2413 , HOH B:2414 , HOH B:2415 , HOH B:2416 , HOH B:2417 , HOH B:2418 , HOH B:2419	BINDING SITE FOR RESIDUE NHW B1000
06	AC6	SOFTWARE	VAL B:96 , ASP B:98 , PHE B:103 , PHE B:105 , TYR B:107 , GLY B:199 , TYR B:211 , HIS B:213 , PHE B:226 , SER B:319 , LEU B:330 , TYR B:334 , ASN B:365 , LEU B:388 , LEU B:410 , NHW B:1000 , HOH B:2129 , HOH B:2225 , HOH B:2240 , HOH B:2420	BINDING SITE FOR RESIDUE 646 B1001
07	AC7	SOFTWARE	GLU C:159 , PHE C:281 , TRP C:289 , HOH C:2326	BINDING SITE FOR RESIDUE DMS C 999
08	AC8	SOFTWARE	TYR C:28 , LYS C:29 , PHE C:30 , TRP C:31 , TYR C:95 , ASN C:161 , PHE C:162 , LEU C:163 , CYS C:164 , VAL C:165 , ARG C:170 , SER C:171 , LYS C:172 , ARG C:173 , LEU C:174 , ALA C:175 , PRO C:176 , THR C:183 , ILE C:186 , TRP C:192 , GLN C:193 , ALA C:194 , TYR C:196 , THR C:197 , LEU C:202 , TYR C:393 , 646 C:1001 , MG C:1414 , HOH C:2002 , HOH C:2005 , HOH C:2206 , HOH C:2213 , HOH C:2371 , HOH C:2372 , HOH C:2373 , HOH C:2374 , HOH C:2375 , HOH C:2376	BINDING SITE FOR RESIDUE NHW C1000
09	AC9	SOFTWARE	VAL C:96 , ASP C:98 , PHE C:103 , PHE C:105 , TYR C:107 , GLY C:199 , TYR C:211 , HIS C:213 , PHE C:226 , SER C:319 , LEU C:330 , TYR C:334 , LEU C:388 , LEU C:410 , NHW C:1000 , HOH C:2133 , HOH C:2225 , HOH C:2377	BINDING SITE FOR RESIDUE 646 C1001
10	BC1	SOFTWARE	ARG A:210 , TYR A:212 , LYS A:373 , HOH A:2442 , HOH A:2470 , ARG B:210 , LYS B:373	BINDING SITE FOR RESIDUE SO4 A1414
11	BC2	SOFTWARE	LEU A:169 , SER A:171 , LYS A:172 , ARG A:173 , LEU A:174 , NHW A:1000	BINDING SITE FOR RESIDUE MG A1415
12	BC3	SOFTWARE	LEU B:169 , SER B:171 , LYS B:172 , ARG B:173 , LEU B:174 , NHW B:1000	BINDING SITE FOR RESIDUE MG B1414
13	BC4	SOFTWARE	LEU C:169 , ARG C:170 , SER C:171 , LYS C:172 , ARG C:173 , LEU C:174 , NHW C:1000	BINDING SITE FOR RESIDUE MG C1414
14	BC5	SOFTWARE	LYS A:180 , LEU A:248 , ARG A:358 , HOH A:2071	BINDING SITE FOR RESIDUE CL A1416
15	BC6	SOFTWARE	LYS B:180 , THR B:247 , LEU B:248 , ARG B:358	BINDING SITE FOR RESIDUE CL B1415
16	BC7	SOFTWARE	TYR C:65 , LYS C:180 , LEU C:248 , ARG C:358 , HOH C:2084	BINDING SITE FOR RESIDUE CL C1415

(no "SS Bond" information available for 2YND)

Asymmetric Unit

No.	Residues
1	Pro A:203	-	Lys A:204
2	Pro B:203	-	Lys B:204
3	Pro C:203	-	Lys C:204

(no "SAP(SNP)/Variant" information available for 2YND)

(no "PROSITE Motif" information available for 2YND)

(no "Exon" information available for 2YND)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:385
 aligned with A5K1A2_PLAVS | A5K1A2 from UniProtKB/TrEMBL  Length:410

    Alignment length:385
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     
         A5K1A2_PLAVS    26 IDYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
               SCOP domains d2ynda1 A:26-210 automated matches                                                                                                                                                       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.............ee......hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhh....hhh.eeeeee....eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee........eee.eeeee.hhhhhhhh.........hhhhhhhhhh..........ee.hhhhhhhhhhhhhhhhh...eee..hhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eee.......ee.eeee...ee...hhhhhhhhhhhhhhhh...eeeee....hhhhh.....ee....eeeeee..ee...hhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ynd A  26 IDYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405

Chain B from PDB  Type:PROTEIN  Length:385
 aligned with A5K1A2_PLAVS | A5K1A2 from UniProtKB/TrEMBL  Length:410

    Alignment length:385
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405     
         A5K1A2_PLAVS    26 IDYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
               SCOP domains d2yndb1 B:26-210 automated matches                                                                                                                                                       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.............ee......hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhh....hhh.eeeeee....eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh...hhhhhhhhhhhhhhh....eeeeee........eee.eeeee.hhhhhhhh.........hhhhhhhhhh..........ee.hhhhhhhhhhhhhhhhh...eee..hhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eee.......ee.eeee...ee...hhhhhhhhhhhhhhhh...eeeee...hhhhhh.....ee....eeeeee..ee...hhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ynd B  26 IDYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405

Chain C from PDB  Type:PROTEIN  Length:368
 aligned with A5K1A2_PLAVS | A5K1A2 from UniProtKB/TrEMBL  Length:410

    Alignment length:384
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406    
         A5K1A2_PLAVS    27 DYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGFSSLNSRLTMSRAIKLYRVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
               SCOP domains d2yndc1 C:27-210 automated matches                                                                                                                                                      -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh.............ee......hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhhh....hhh.eeeeee....eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh....eeeeee........eeeeeeeee.hhhhhhhh..----------------...........ee.hhhhhhhhhhhhhhhhh...eee..hhhhhhhhhh.....eeeeeeee..eeeeeeeeee..eee.......ee.eeee...ee...hhhhhhhhhhhhhhhh...eeeee...hhhhhh.....eeeeeeeeeeee..ee...hhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ynd C  27 DYKFWYTQPVPKINDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGFISAIPTDICIHKRTIKMAEVNFLCVHKTLRSKRLAPVLIKEITRRINLENIWQAIYTAGVYLPKPVSDARYYHRSINVKKLIEIGF----------------RVEDTLNIKNMRLMKKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYTYVNEENGKIKDMISFYSLPSQILGNDKYSTLNAAYSFYNVTTTATFKQLMQDAILLAKRNNFDVFNALEVMQNKSVFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL 410
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226         -      |246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406    
                                                                                                                                                                                                                                 226              243

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Plasmodium vivax [TaxId: 5855] (6)

1a	d2ynda1	A:26-210
1b	d2yndb1	B:26-210
1c	d2yndc1	C:27-210

(no "CATH Domain" information available for 2YND)

(no "Pfam Domain" information available for 2YND)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (A5K1A2_PLAVS | A5K1A2)

molecular function
	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006499	N-terminal protein myristoylation	The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		646	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DMS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NHW	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
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		BC2	[ RasMol ]	+environment [ RasMol ]
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		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Pro A:203 - Lys A:204	[ RasMol ]
		Pro B:203 - Lys B:204	[ RasMol ]
		Pro C:203 - Lys C:204	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
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Access by PDB/NDB ID
	2ynd
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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2ync	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH YNC12-COA THIOESTER.
2yne	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE IN COMPLEX WITH A BENZOTHIOPHENE INHIBITOR
4a95	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH QUINOLINE INHIBITOR
4b10	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A NON- HYDROLYSABLE CO-FACTOR
4b11	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A BOUND BENZOFURAN INHIBITOR (COMPOUND 13)
4b12	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A BOUND BENZOFURAN INHIBITOR (COMPOUND 23)
4b13	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A BOUND BENZOFURAN INHIBITOR (COMPOUND 25)
4b14	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A BOUND BENZOFURAN INHIBITOR (COMPOUND 26)
4bbh	PLASMODIUM VIVAX N-MYRISTOYLTRANSFERASE WITH A BOUND BENZOTHIOPHENE INHIBITOR

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File