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(-) Description

Title :  INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
 
Authors :  B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Borast
Date :  01 Jun 11  (Deposition) - 21 Sep 11  (Release) - 23 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Boraston
Inhibition Of The Pneumococcal Virulence Factor Strh And Molecular Insights Into N-Glycan Recognition And Hydrolysis
Structure V. 19 1603 2011
PubMed-ID: 22078560  |  Reference-DOI: 10.1016/J.STR.2011.08.011

(-) Compounds

Molecule 1 - BETA-N-ACETYLHEXOSAMINIDASE
    Chains: A, B, C, D
    EC Number: 3.2.1.52
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 627-1062
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4
    Synonym: GLYCOSIDE HYDROLASE GH20

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 62)

Asymmetric Unit (4, 62)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO46Ligand/Ion1,2-ETHANEDIOL
3MAN4Ligand/IonALPHA-D-MANNOSE
4NAG8Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (4, 21)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO17Ligand/Ion1,2-ETHANEDIOL
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (4, 12)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO8Ligand/Ion1,2-ETHANEDIOL
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (4, 11)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO7Ligand/Ion1,2-ETHANEDIOL
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (4, 18)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2EDO14Ligand/Ion1,2-ETHANEDIOL
3MAN1Ligand/IonALPHA-D-MANNOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (47, 47)

Asymmetric Unit (47, 47)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:751BINDING SITE FOR RESIDUE EDO A2044
02AC2SOFTWAREALA A:888 , GLY A:891BINDING SITE FOR RESIDUE EDO A2045
03AC3SOFTWAREGLU A:724BINDING SITE FOR RESIDUE EDO A2046
04AC4SOFTWAREASP A:790 , ALA A:793 , ARG A:842 , GLN D:885 , SER D:933 , THR D:934 , LYS D:935 , GLU D:938 , VAL D:939BINDING SITE FOR RESIDUE EDO A2047
05AC5SOFTWARETRP A:876 , TRP A:877 , EDO A:2052 , HOH A:3220 , GLN D:845BINDING SITE FOR RESIDUE EDO A2048
06AC6SOFTWAREGLN A:885 , SER A:933 , THR A:934 , LYS A:935 , VAL A:939 , ALA D:793 , ARG D:842 , HOH D:3075BINDING SITE FOR RESIDUE EDO A2049
07AC7SOFTWARETHR A:645 , ARG A:651BINDING SITE FOR RESIDUE EDO A2050
08AC8SOFTWAREASP A:809 , HOH A:3102BINDING SITE FOR RESIDUE EDO A2051
09AC9SOFTWARELYS A:874 , TRP A:876 , ASN A:880 , LEU A:881 , EDO A:2048 , EDO D:2044BINDING SITE FOR RESIDUE EDO A2052
10BC1SOFTWARELYS A:918 , ASN A:922 , HOH A:3167BINDING SITE FOR RESIDUE EDO A2053
11BC2SOFTWAREARG A:954 , SER A:956BINDING SITE FOR RESIDUE EDO A2054
12BC3SOFTWAREASN A:898 , ASP A:900 , THR A:926 , GLN A:930 , SER A:933BINDING SITE FOR RESIDUE EDO A2055
13BC4SOFTWAREASP A:730 , ARG A:980 , GLU D:856 , LYS D:858BINDING SITE FOR RESIDUE EDO A2056
14BC5SOFTWARELYS A:633 , GLY A:660 , TYR A:661 , SER A:662 , ASP A:730 , ARG A:980BINDING SITE FOR RESIDUE EDO A2057
15BC6SOFTWAREGLU A:830BINDING SITE FOR RESIDUE EDO A2058
16BC7SOFTWARELYS B:727 , HOH B:3203 , ASP C:857 , LYS C:858 , ASP C:859 , TYR C:886BINDING SITE FOR RESIDUE EDO B2044
17BC8SOFTWARELYS B:893BINDING SITE FOR RESIDUE EDO B2045
18BC9SOFTWARESER B:662 , ASP B:663 , ASP B:730 , GLY B:732BINDING SITE FOR RESIDUE EDO B2046
19CC1SOFTWAREALA B:760 , HIS B:761 , ASP B:771 , TYR B:806 , LEU B:824BINDING SITE FOR RESIDUE EDO B2047
20CC2SOFTWARELYS B:918BINDING SITE FOR RESIDUE EDO B2048
21CC3SOFTWARESER B:1001BINDING SITE FOR RESIDUE EDO B2049
22CC4SOFTWAREGLU B:830 , THR B:834BINDING SITE FOR RESIDUE EDO B2050
23CC5SOFTWAREHOH B:3202BINDING SITE FOR RESIDUE EDO B2051
24CC6SOFTWAREGLN C:716 , THR C:720 , HOH C:3199 , HOH C:3200BINDING SITE FOR RESIDUE EDO C2044
25CC7SOFTWAREGLU C:751 , LYS C:756 , ASN C:757BINDING SITE FOR RESIDUE EDO C2045
26CC8SOFTWAREALA C:630 , LYS C:631 , ASN C:632 , ASP C:663BINDING SITE FOR RESIDUE EDO C2046
27CC9SOFTWAREALA C:837 , LYS C:840 , HOH C:3093BINDING SITE FOR RESIDUE EDO C2047
28DC1SOFTWAREGLU C:751BINDING SITE FOR RESIDUE EDO C2048
29DC2SOFTWAREGLU B:938 , VAL B:939 , HOH B:3163 , ASP C:790BINDING SITE FOR RESIDUE EDO C2049
30DC3SOFTWAREASP A:857 , LEU A:881 , SER A:883 , EDO A:2052 , THR D:796BINDING SITE FOR RESIDUE EDO D2044
31DC4SOFTWAREALA D:760 , HIS D:761 , ASP D:771 , LEU D:824BINDING SITE FOR RESIDUE EDO D2045
32DC5SOFTWAREGLN D:716 , THR D:720 , LYS D:795 , HOH D:3176BINDING SITE FOR RESIDUE EDO D2046
33DC6SOFTWARESER D:662 , ASP D:663 , ASP D:730BINDING SITE FOR RESIDUE EDO D2047
34DC7SOFTWARELYS D:893 , HOH D:3101BINDING SITE FOR RESIDUE EDO D2048
35DC8SOFTWAREALA D:704 , HOH D:3053BINDING SITE FOR RESIDUE EDO D2049
36DC9SOFTWARELYS D:874 , GLY D:875 , TRP D:876 , TYR D:879BINDING SITE FOR RESIDUE EDO D2050
37EC1SOFTWAREASN D:757 , HIS D:761 , HOH D:3063BINDING SITE FOR RESIDUE EDO D2051
38EC2SOFTWAREASP D:678 , LYS D:695BINDING SITE FOR RESIDUE EDO D2052
39EC3SOFTWAREASP D:859 , ASP D:860BINDING SITE FOR RESIDUE EDO D2053
40EC4SOFTWAREGLY D:826 , ASN D:833 , GLN D:862BINDING SITE FOR RESIDUE EDO D2054
41EC5SOFTWARELYS D:918 , HOH D:3124BINDING SITE FOR RESIDUE EDO D2055
42EC6SOFTWAREPRO D:942 , THR D:943BINDING SITE FOR RESIDUE EDO D2056
43EC7SOFTWARELYS D:893BINDING SITE FOR RESIDUE EDO D2057
44EC8SOFTWAREARG A:641 , ASP A:804 , GLN A:805 , ASN A:808 , ALA A:813 , TRP A:872 , TRP A:876 , TYR A:902 , ILE A:904 , TRP A:951 , ASP A:953 , HOH A:3025 , HOH A:3219 , ASP D:866BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 2040 TO 2043
45EC9SOFTWAREARG B:641 , HIS B:742 , ASP B:804 , GLN B:805 , PHE B:849 , TRP B:872 , TRP B:876 , TRP B:877 , TYR B:902 , ILE B:904 , TRP B:951 , ASP B:953 , HOH B:3008BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 2040 TO 2043
46FC1SOFTWAREARG C:641 , HIS C:742 , ASP C:804 , GLN C:805 , ASN C:808 , ALA C:813 , TRP C:872 , TRP C:876 , TYR C:902 , ILE C:904 , TRP C:951 , ASP C:953 , HOH C:3024BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 2040 TO 2043
47FC2SOFTWAREARG D:641 , HIS D:742 , ASP D:804 , GLN D:805 , TRP D:872 , TRP D:876 , TYR D:902 , ILE D:904 , TRP D:951 , ASP D:953 , HOH D:3019BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 2040 TO 2043

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YL9)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:739 -Pro A:740
2Tyr A:936 -Pro A:937
3Ser B:739 -Pro B:740
4Tyr B:936 -Pro B:937
5Ser C:739 -Pro C:740
6Tyr C:936 -Pro C:937
7Ser D:739 -Pro D:740
8Tyr D:936 -Pro D:937

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YL9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YL9)

(-) Exons   (0, 0)

(no "Exon" information available for 2YL9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
 aligned with STRH_STRPN | P49610 from UniProtKB/Swiss-Prot  Length:1312

    Alignment length:417
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032       
          STRH_STRPN    623 KREVEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhheeeeeee......hhhhhhhhhhhhhhhh..eeeeeee............eee..eeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhh.....eee...eeeeee...hhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeeee....hhhhh.........eeee...ee..ee..hhhhhhhh...eee.hhhhhee...hhhhh..hhhhhhhhhhhh................eeeeeeeee........hhhhhhhhhhhhhhh........hhhhhhhhh...------.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yl9 A  623 GSHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIP------SKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992 |    1002      1012      1022      1032       
                                                                                                                                                                                                                                                                                                                                                                                                             994   1001                                      


Chain B from PDB  Type:PROTEIN  Length:409
 aligned with STRH_STRPN | P49610 from UniProtKB/Swiss-Prot  Length:1312

    Alignment length:416
                                   633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      
          STRH_STRPN    624 REVEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhheeeeeee......hhhhhhhhhhhhhhhh..eeeeeee............eee..eeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhh.....eee...eeeeee...hhhhhhhhhhhhhhhhhhhh....eeeee...........hhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeee....hhhhh.........eeee...ee..ee..hhhhhhhhh..eee.hhhhhee..........hhhhhhhhhhhh................eeeeeeeee........hhhhhhhhhhhhhhh........hhhhhhhhh..-------..hhhhhhhhhh..........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yl9 B  624 SHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKI-------SKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
                                   633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      
                                                                                                                                                                                                                                                                                                                                                                                                           993    1001                                      


Chain C from PDB  Type:PROTEIN  Length:410
 aligned with STRH_STRPN | P49610 from UniProtKB/Swiss-Prot  Length:1312

    Alignment length:417
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032       
          STRH_STRPN    623 KREVEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeee......hhhhhhhhhhhhhhhh..eeeeeee.....ee.....eee..eeehhhhhhhhhhhhhhhhh.......eehhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhh......eee...eeeeee...hhhhhhhhhhhhhhhhhhhh....eeeee...........hhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeee....hhhhh.........eeee...........hhhhhhhh..eeee.hhhhhee...hhhhh..hhhhhhhhhhhh................eeeeeeeee........hhhhhhhhhhhhhhh........hhhhhhhhh..-------.....hhhhhhhhh........hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yl9 C  623 GSHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKI-------SKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992|     1002      1012      1022      1032       
                                                                                                                                                                                                                                                                                                                                                                                                            993    1001                                      


Chain D from PDB  Type:PROTEIN  Length:411
 aligned with STRH_STRPN | P49610 from UniProtKB/Swiss-Prot  Length:1312

    Alignment length:417
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032       
          STRH_STRPN    623 KREVEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDEYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIPTNLEGYSKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeee......hhhhhhhhhhhhhhhh..eeeeeee............eee..eeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhh.....eee...eeeeee...hhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhh..eeeee....hhhhh.........eeee...ee..ee..hhhhhhhh...eee.hhhhhee..........hhhhhhhhhhhh................eeeeeeeee........hhhhhhhhhhhhhhh........hhhhhhhh....------..hhhhhhhhhhhh........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2yl9 D  623 GSHMEKLAKNKVISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGNDGLRFLLDDMTITANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHMDAMLVAMEKLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIGKYMDFFAGKTKIFNFGTDQYANDATSAQGWYYLKWYQLYGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRANYNALREELAKIP------SKESLEALDAAKTALNYNLNRNKQAELDTLVANLKAALQ 1039
                                   632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992 |    1002      1012      1022      1032       
                                                                                                                                                                                                                                                                                                                                                                                                             994   1001
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2YL9)

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(no "CATH Domain" information available for 2YL9)

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(no "Pfam Domain" information available for 2YL9)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (STRH_STRPN | P49610)
molecular function
    GO:0004563    beta-N-acetylhexosaminidase activity    Catalysis of the hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  STRH_STRPN | P49610
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STRH_STRPN | P49610: 2ltj 2yl5 2yl6 2yl8 2yla 2yll 4az5 4az6 4az7 4azb 4azc 4azg 4azh 4azi

(-) Related Entries Specified in the PDB File

2yl5 INHIBITION OF THE PNEUMOCCOCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
2yl6 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
2yl8 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
2yla INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
2yll INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS