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2YL9
Asym. Unit
Info
Asym.Unit (294 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (75 KB)
Biol.Unit 3 (75 KB)
Biol.Unit 4 (75 KB)
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(1)
Title
:
INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS
Authors
:
B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Borast
Date
:
01 Jun 11 (Deposition) - 21 Sep 11 (Release) - 23 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, M. A. Higgins, D. W. Abbott, C. Robb, A. B. Dalia, L. Deng, J. N. Weiser, T. B. Parsons, A. J. Fairbanks, D. J. Vocadlo, A. B. Boraston
Inhibition Of The Pneumococcal Virulence Factor Strh And Molecular Insights Into N-Glycan Recognition And Hydrolysis
Structure V. 19 1603 2011
[
close entry info
]
Hetero Components
(4, 62)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
EDO
46
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:751
BINDING SITE FOR RESIDUE EDO A2044
02
AC2
SOFTWARE
ALA A:888 , GLY A:891
BINDING SITE FOR RESIDUE EDO A2045
03
AC3
SOFTWARE
GLU A:724
BINDING SITE FOR RESIDUE EDO A2046
04
AC4
SOFTWARE
ASP A:790 , ALA A:793 , ARG A:842 , GLN D:885 , SER D:933 , THR D:934 , LYS D:935 , GLU D:938 , VAL D:939
BINDING SITE FOR RESIDUE EDO A2047
05
AC5
SOFTWARE
TRP A:876 , TRP A:877 , EDO A:2052 , HOH A:3220 , GLN D:845
BINDING SITE FOR RESIDUE EDO A2048
06
AC6
SOFTWARE
GLN A:885 , SER A:933 , THR A:934 , LYS A:935 , VAL A:939 , ALA D:793 , ARG D:842 , HOH D:3075
BINDING SITE FOR RESIDUE EDO A2049
07
AC7
SOFTWARE
THR A:645 , ARG A:651
BINDING SITE FOR RESIDUE EDO A2050
08
AC8
SOFTWARE
ASP A:809 , HOH A:3102
BINDING SITE FOR RESIDUE EDO A2051
09
AC9
SOFTWARE
LYS A:874 , TRP A:876 , ASN A:880 , LEU A:881 , EDO A:2048 , EDO D:2044
BINDING SITE FOR RESIDUE EDO A2052
10
BC1
SOFTWARE
LYS A:918 , ASN A:922 , HOH A:3167
BINDING SITE FOR RESIDUE EDO A2053
11
BC2
SOFTWARE
ARG A:954 , SER A:956
BINDING SITE FOR RESIDUE EDO A2054
12
BC3
SOFTWARE
ASN A:898 , ASP A:900 , THR A:926 , GLN A:930 , SER A:933
BINDING SITE FOR RESIDUE EDO A2055
13
BC4
SOFTWARE
ASP A:730 , ARG A:980 , GLU D:856 , LYS D:858
BINDING SITE FOR RESIDUE EDO A2056
14
BC5
SOFTWARE
LYS A:633 , GLY A:660 , TYR A:661 , SER A:662 , ASP A:730 , ARG A:980
BINDING SITE FOR RESIDUE EDO A2057
15
BC6
SOFTWARE
GLU A:830
BINDING SITE FOR RESIDUE EDO A2058
16
BC7
SOFTWARE
LYS B:727 , HOH B:3203 , ASP C:857 , LYS C:858 , ASP C:859 , TYR C:886
BINDING SITE FOR RESIDUE EDO B2044
17
BC8
SOFTWARE
LYS B:893
BINDING SITE FOR RESIDUE EDO B2045
18
BC9
SOFTWARE
SER B:662 , ASP B:663 , ASP B:730 , GLY B:732
BINDING SITE FOR RESIDUE EDO B2046
19
CC1
SOFTWARE
ALA B:760 , HIS B:761 , ASP B:771 , TYR B:806 , LEU B:824
BINDING SITE FOR RESIDUE EDO B2047
20
CC2
SOFTWARE
LYS B:918
BINDING SITE FOR RESIDUE EDO B2048
21
CC3
SOFTWARE
SER B:1001
BINDING SITE FOR RESIDUE EDO B2049
22
CC4
SOFTWARE
GLU B:830 , THR B:834
BINDING SITE FOR RESIDUE EDO B2050
23
CC5
SOFTWARE
HOH B:3202
BINDING SITE FOR RESIDUE EDO B2051
24
CC6
SOFTWARE
GLN C:716 , THR C:720 , HOH C:3199 , HOH C:3200
BINDING SITE FOR RESIDUE EDO C2044
25
CC7
SOFTWARE
GLU C:751 , LYS C:756 , ASN C:757
BINDING SITE FOR RESIDUE EDO C2045
26
CC8
SOFTWARE
ALA C:630 , LYS C:631 , ASN C:632 , ASP C:663
BINDING SITE FOR RESIDUE EDO C2046
27
CC9
SOFTWARE
ALA C:837 , LYS C:840 , HOH C:3093
BINDING SITE FOR RESIDUE EDO C2047
28
DC1
SOFTWARE
GLU C:751
BINDING SITE FOR RESIDUE EDO C2048
29
DC2
SOFTWARE
GLU B:938 , VAL B:939 , HOH B:3163 , ASP C:790
BINDING SITE FOR RESIDUE EDO C2049
30
DC3
SOFTWARE
ASP A:857 , LEU A:881 , SER A:883 , EDO A:2052 , THR D:796
BINDING SITE FOR RESIDUE EDO D2044
31
DC4
SOFTWARE
ALA D:760 , HIS D:761 , ASP D:771 , LEU D:824
BINDING SITE FOR RESIDUE EDO D2045
32
DC5
SOFTWARE
GLN D:716 , THR D:720 , LYS D:795 , HOH D:3176
BINDING SITE FOR RESIDUE EDO D2046
33
DC6
SOFTWARE
SER D:662 , ASP D:663 , ASP D:730
BINDING SITE FOR RESIDUE EDO D2047
34
DC7
SOFTWARE
LYS D:893 , HOH D:3101
BINDING SITE FOR RESIDUE EDO D2048
35
DC8
SOFTWARE
ALA D:704 , HOH D:3053
BINDING SITE FOR RESIDUE EDO D2049
36
DC9
SOFTWARE
LYS D:874 , GLY D:875 , TRP D:876 , TYR D:879
BINDING SITE FOR RESIDUE EDO D2050
37
EC1
SOFTWARE
ASN D:757 , HIS D:761 , HOH D:3063
BINDING SITE FOR RESIDUE EDO D2051
38
EC2
SOFTWARE
ASP D:678 , LYS D:695
BINDING SITE FOR RESIDUE EDO D2052
39
EC3
SOFTWARE
ASP D:859 , ASP D:860
BINDING SITE FOR RESIDUE EDO D2053
40
EC4
SOFTWARE
GLY D:826 , ASN D:833 , GLN D:862
BINDING SITE FOR RESIDUE EDO D2054
41
EC5
SOFTWARE
LYS D:918 , HOH D:3124
BINDING SITE FOR RESIDUE EDO D2055
42
EC6
SOFTWARE
PRO D:942 , THR D:943
BINDING SITE FOR RESIDUE EDO D2056
43
EC7
SOFTWARE
LYS D:893
BINDING SITE FOR RESIDUE EDO D2057
44
EC8
SOFTWARE
ARG A:641 , ASP A:804 , GLN A:805 , ASN A:808 , ALA A:813 , TRP A:872 , TRP A:876 , TYR A:902 , ILE A:904 , TRP A:951 , ASP A:953 , HOH A:3025 , HOH A:3219 , ASP D:866
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 2040 TO 2043
45
EC9
SOFTWARE
ARG B:641 , HIS B:742 , ASP B:804 , GLN B:805 , PHE B:849 , TRP B:872 , TRP B:876 , TRP B:877 , TYR B:902 , ILE B:904 , TRP B:951 , ASP B:953 , HOH B:3008
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 2040 TO 2043
46
FC1
SOFTWARE
ARG C:641 , HIS C:742 , ASP C:804 , GLN C:805 , ASN C:808 , ALA C:813 , TRP C:872 , TRP C:876 , TYR C:902 , ILE C:904 , TRP C:951 , ASP C:953 , HOH C:3024
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 2040 TO 2043
47
FC2
SOFTWARE
ARG D:641 , HIS D:742 , ASP D:804 , GLN D:805 , TRP D:872 , TRP D:876 , TYR D:902 , ILE D:904 , TRP D:951 , ASP D:953 , HOH D:3019
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 2040 TO 2043
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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[
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (294 KB)
Header - Asym.Unit
Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (75 KB)
Header - Biol.Unit 2
Biol.Unit 3 (75 KB)
Header - Biol.Unit 3
Biol.Unit 4 (75 KB)
Header - Biol.Unit 4
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