Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
(-)Biological Unit 9
(-)Biological Unit 10
(-)Biological Unit 11
(-)Biological Unit 12
(-)Biological Unit 13
(-)Biological Unit 14
(-)Biological Unit 15
(-)Biological Unit 16
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)
Image Biological Unit 9
Biological Unit 9  (Jmol Viewer)
Image Biological Unit 10
Biological Unit 10  (Jmol Viewer)
Image Biological Unit 11
Biological Unit 11  (Jmol Viewer)
Image Biological Unit 12
Biological Unit 12  (Jmol Viewer)
Image Biological Unit 13
Biological Unit 13  (Jmol Viewer)
Image Biological Unit 14
Biological Unit 14  (Jmol Viewer)
Image Biological Unit 15
Biological Unit 15  (Jmol Viewer)
Image Biological Unit 16
Biological Unit 16  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF MECA121 & CLPC N-DOMAIN COMPLEX
 
Authors :  F. Wang, Z. Q. Mei, J. W. Wang, Y. G. Shi
Date :  10 Dec 10  (Deposition) - 16 Mar 11  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Biol. Unit 12:  L  (1x)
Biol. Unit 13:  M  (1x)
Biol. Unit 14:  N  (1x)
Biol. Unit 15:  O  (1x)
Biol. Unit 16:  P  (1x)
Keywords :  Transcription, Proteolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Wang, Z. Mei, Y. Qi, C. Yan, Q. Hu, J. Wang, Y. Shi
Structure And Mechanism Of The Hexameric Meca-Clpc Molecula Machine.
Nature V. 471 331 2011
PubMed-ID: 21368759  |  Reference-DOI: 10.1038/NATURE09780

(-) Compounds

Molecule 1 - NEGATIVE REGULATOR OF GENETIC COMPETENCE CLPC/MECB
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-DOMAIN, RESIDUES 1-149
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: CLPC
 
Molecule 2 - ADAPTER PROTEIN MECA 1
    Chains: I, J, K, L, M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 121-218
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: MECA121

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): A               
Biological Unit 2 (1x):  B              
Biological Unit 3 (1x):   C             
Biological Unit 4 (1x):    D            
Biological Unit 5 (1x):     E           
Biological Unit 6 (1x):      F          
Biological Unit 7 (1x):       G         
Biological Unit 8 (1x):        H        
Biological Unit 9 (1x):         I       
Biological Unit 10 (1x):          J      
Biological Unit 11 (1x):           K     
Biological Unit 12 (1x):            L    
Biological Unit 13 (1x):             M   
Biological Unit 14 (1x):              N  
Biological Unit 15 (1x):               O 
Biological Unit 16 (1x):                P

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1SRT16Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 8 (1, 2)
No.NameCountTypeFull Name
1SRT2Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 10 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 11 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 12 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 13 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 14 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 15 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID
Biological Unit 16 (0, 0)
No.NameCountTypeFull Name
1SRT-1Ligand/IonS,R MESO-TARTARIC ACID

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:7 , ARG A:9 , GLY A:44 , ILE A:45 , GLY A:104 , THR A:105 , GLU A:106BINDING SITE FOR RESIDUE SRT A 500
02AC2SOFTWAREGLY A:99 , HIS A:100 , SER A:101 , TYR A:102 , HOH A:2014BINDING SITE FOR RESIDUE SRT A 600
03AC3SOFTWARETHR B:7 , ARG B:9 , GLY B:44 , ILE B:45 , GLY B:104 , THR B:105 , GLU B:106BINDING SITE FOR RESIDUE SRT B 500
04AC4SOFTWAREGLY B:99 , HIS B:100 , SER B:101 , TYR B:102 , TYR K:162 , SER K:189 , SER K:190 , ILE K:191 , ARG K:195BINDING SITE FOR RESIDUE SRT B 600
05AC5SOFTWARETHR C:7 , ARG C:9 , GLY C:44 , ILE C:45 , GLY C:104 , THR C:105 , GLU C:106BINDING SITE FOR RESIDUE SRT C 500
06AC6SOFTWAREGLY C:99 , HIS C:100 , SER C:101 , TYR C:102 , HOH C:2011 , TYR J:162 , SER J:189 , SER J:190 , ILE J:191 , ARG J:195BINDING SITE FOR RESIDUE SRT C 600
07AC7SOFTWARETHR D:7 , ARG D:9 , GLY D:44 , ILE D:45 , GLY D:104 , THR D:105 , GLU D:106BINDING SITE FOR RESIDUE SRT D 500
08AC8SOFTWAREGLY D:99 , HIS D:100 , SER D:101 , TYR D:102 , HOH D:2017 , TYR I:162 , SER I:189 , SER I:190 , ILE I:191 , ARG I:195 , HOH I:2005BINDING SITE FOR RESIDUE SRT D 600
09AC9SOFTWARETHR E:7 , ARG E:9 , GLY E:44 , ILE E:45 , GLY E:104 , THR E:105 , GLU E:106BINDING SITE FOR RESIDUE SRT E 500
10BC1SOFTWAREGLY E:99 , HIS E:100 , SER E:101 , TYR E:102 , HOH E:2007 , TYR P:162 , SER P:189 , SER P:190 , ILE P:191 , ARG P:195BINDING SITE FOR RESIDUE SRT E 600
11BC2SOFTWARETHR F:7 , ARG F:9 , GLY F:44 , ILE F:45 , GLY F:104 , THR F:105 , GLU F:106 , HOH F:2003BINDING SITE FOR RESIDUE SRT F 500
12BC3SOFTWAREGLY F:99 , HIS F:100 , SER F:101 , TYR F:102 , SER O:189 , SER O:190 , ILE O:191 , ARG O:195 , HOH O:2004BINDING SITE FOR RESIDUE SRT F 600
13BC4SOFTWARETHR G:7 , ARG G:9 , GLY G:44 , ILE G:45 , GLY G:104 , THR G:105 , GLU G:106 , HOH G:2011BINDING SITE FOR RESIDUE SRT G 500
14BC5SOFTWAREGLY G:99 , HIS G:100 , SER G:101 , TYR G:102 , TYR N:162 , SER N:189 , SER N:190 , ILE N:191 , ARG N:195BINDING SITE FOR RESIDUE SRT G 600
15BC6SOFTWARETHR H:7 , ARG H:9 , GLY H:44 , ILE H:45 , GLY H:104 , THR H:105 , GLU H:106 , HOH H:2008BINDING SITE FOR RESIDUE SRT H 500
16BC7SOFTWAREGLY H:99 , HIS H:100 , SER H:101 , TYR H:102 , SER M:189 , SER M:190 , ILE M:191 , ARG M:195 , HOH M:2003BINDING SITE FOR RESIDUE SRT H 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Y1R)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Arg A:70 -Gly A:71
2Arg C:70 -Gly C:71
3Arg D:70 -Gly D:71
4Arg E:70 -Gly E:71
5Arg G:70 -Gly G:71
6Arg H:70 -Gly H:71

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Y1R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Y1R)

(-) Exons   (0, 0)

(no "Exon" information available for 2Y1R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
           CLPC_BACSU     3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r A   3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142


Chain B from PDB  Type:PROTEIN  Length:139
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         
           CLPC_BACSU     4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r B   4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         


Chain C from PDB  Type:PROTEIN  Length:139
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         
           CLPC_BACSU     4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r C   4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         


Chain D from PDB  Type:PROTEIN  Length:141
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:141
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 
           CLPC_BACSU     3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r D   3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 


Chain E from PDB  Type:PROTEIN  Length:139
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         
           CLPC_BACSU     4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r E   4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         


Chain F from PDB  Type:PROTEIN  Length:133
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:140
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142
           CLPC_BACSU     3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh-------...eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r F   3 FGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLI-------QTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    12        22        32        42        52        62     |   -   |    82        92       102       112       122       132       142
                                                                                            68      76                                                                  


Chain G from PDB  Type:PROTEIN  Length:139
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         
           CLPC_BACSU     4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r G   4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         


Chain H from PDB  Type:PROTEIN  Length:139
 aligned with CLPC_BACSU | P37571 from UniProtKB/Swiss-Prot  Length:810

    Alignment length:139
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         
           CLPC_BACSU     4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------Clp_N-2y1rH01 H:91-142                               Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------Clp_N-2y1rH02 H:91-142                               Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------Clp_N-2y1rH03 H:91-142                               Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------Clp_N-2y1rH04 H:91-142                               Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------Clp_N-2y1rH05 H:91-142                               Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------Clp_N-2y1rH06 H:91-142                               Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------Clp_N-2y1rH07 H:91-142                               Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------Clp_N-2y1rH08 H:91-142                               Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------Clp_N-2y1rH09 H:91-142                               Pfam domains (9)
          Pfam domains (10) ---------------------------------------------------------------------------------------Clp_N-2y1rH10 H:91-142                               Pfam domains (10)
          Pfam domains (11) ---------------------------------------------------------------------------------------Clp_N-2y1rH11 H:91-142                               Pfam domains (11)
          Pfam domains (12) ---------------------------------------------------------------------------------------Clp_N-2y1rH12 H:91-142                               Pfam domains (12)
          Pfam domains (13) ---------------------------------------------------------------------------------------Clp_N-2y1rH13 H:91-142                               Pfam domains (13)
          Pfam domains (14) ---------------------------------------------------------------------------------------Clp_N-2y1rH14 H:91-142                               Pfam domains (14)
          Pfam domains (15) ---------------------------------------------------------------------------------------Clp_N-2y1rH15 H:91-142                               Pfam domains (15)
          Pfam domains (16) ---------------------------------------------------------------------------------------Clp_N-2y1rH16 H:91-142                               Pfam domains (16)
         Sec.struct. author .eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y1r H   4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLL 142
                                    13        23        33        43        53        63        73        83        93       103       113       123       133         


Chain I from PDB  Type:PROTEIN  Length:94
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:94
                                   134       144       154       164       174       184       194       204       214    
          MECA1_BACSU   125 QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.hhhhhhhhhhh.....eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2y1r I 125 QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
                                   134       144       154       164       174       184       194       204       214    


Chain J from PDB  Type:PROTEIN  Length:95
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:95
                                   133       143       153       163       173       183       193       203       213     
          MECA1_BACSU   124 EQKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.hhhhhhhhhhh.....eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 2y1r J 124 EQKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
                                   133       143       153       163       173       183       193       203       213     


Chain K from PDB  Type:PROTEIN  Length:92
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:92
                                   135       145       155       165       175       185       195       205       215  
          MECA1_BACSU   126 KLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhh.....eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 2y1r K 126 KLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
                                   135       145       155       165       175       185       195       205       215  


Chain L from PDB  Type:PROTEIN  Length:4
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:4
          MECA1_BACSU   215 HFAS 218
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 2y1r L 215 HFAS 218


Chain M from PDB  Type:PROTEIN  Length:90
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:92
                                   135       145       155       165       175       185       195       205       215  
          MECA1_BACSU   126 KLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhh.--..eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 2y1r M 126 KLQFVLRFGDFEDVISLSKLN--GSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
                                   135       145|  |   155       165       175       185       195       205       215  
                                              146  |                                                                    
                                                 149                                                                    


Chain N from PDB  Type:PROTEIN  Length:89
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:93
                                   134       144       154       164       174       184       194       204       214   
          MECA1_BACSU   125 QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.hhhhhhhhhhh----.eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2y1r N 125 QKLQFVLRFGDFEDVISLSKL----SKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
                                   134       144|    | 154       164       174       184       194       204       214   
                                              145  150                                                                   


Chain O from PDB  Type:PROTEIN  Length:89
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:91
                                   136       146       156       166       176       186       196       206       216 
          MECA1_BACSU   127 LQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhh..--.eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 2y1r O 127 LQFVLRFGDFEDVISLSKLNV--SKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFA 217
                                   136       146|  |   156       166       176       186       196       206       216 
                                              147  |                                                                   
                                                 150                                                                   


Chain P from PDB  Type:PROTEIN  Length:94
 aligned with MECA1_BACSU | P37958 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:94
                                   134       144       154       164       174       184       194       204       214    
          MECA1_BACSU   125 QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) MecA-2y1rP01 P:125-214                                                                    ---- Pfam domains (1)
           Pfam domains (2) MecA-2y1rP02 P:125-214                                                                    ---- Pfam domains (2)
           Pfam domains (3) MecA-2y1rP03 P:125-214                                                                    ---- Pfam domains (3)
           Pfam domains (4) MecA-2y1rP04 P:125-214                                                                    ---- Pfam domains (4)
           Pfam domains (5) MecA-2y1rP05 P:125-214                                                                    ---- Pfam domains (5)
           Pfam domains (6) MecA-2y1rP06 P:125-214                                                                    ---- Pfam domains (6)
           Pfam domains (7) MecA-2y1rP07 P:125-214                                                                    ---- Pfam domains (7)
         Sec.struct. author ...eeeeee.hhhhhhhhhhh.....eeeeeee..eeeeeee....hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 2y1r P 125 QKLQFVLRFGDFEDVISLSKLNVNGSKTTLYSFENRYYLYVDFCNMTDEEVENQLSILLEYATESSISIHRLEEYGKLIISEHALETIKKHFAS 218
                                   134       144       154       164       174       184       194       204       214
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2Y1R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2Y1R)

(-) Pfam Domains  (2, 23)

Asymmetric Unit
(-)
Clan: no clan defined [family: Clp_N] (16)
(-)
Family: Clp_N (16)
(-)
Bacillus subtilis (4)
1aClp_N-2y1rH01H:91-142
1bClp_N-2y1rH02H:91-142
1cClp_N-2y1rH03H:91-142
1dClp_N-2y1rH04H:91-142
1eClp_N-2y1rH05H:91-142
1fClp_N-2y1rH06H:91-142
1gClp_N-2y1rH07H:91-142
1hClp_N-2y1rH08H:91-142
1iClp_N-2y1rH09H:91-142
1jClp_N-2y1rH10H:91-142
1kClp_N-2y1rH11H:91-142
1lClp_N-2y1rH12H:91-142
1mClp_N-2y1rH13H:91-142
1nClp_N-2y1rH14H:91-142
1oClp_N-2y1rH15H:91-142
1pClp_N-2y1rH16H:91-142
(-)
Clan: no clan defined [family: MecA] (5)
(-)
Family: MecA (5)
(-)
Bacillus subtilis (5)
2aMecA-2y1rP01P:125-214
2bMecA-2y1rP02P:125-214
2cMecA-2y1rP03P:125-214
2dMecA-2y1rP04P:125-214
2eMecA-2y1rP05P:125-214
2fMecA-2y1rP06P:125-214
2gMecA-2y1rP07P:125-214

(-) Gene Ontology  (11, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (CLPC_BACSU | P37571)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030420    establishment of competence for transformation    The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain I,J,K,L,M,N,O,P   (MECA1_BACSU | P37958)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
biological process
    GO:0030420    establishment of competence for transformation    The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
    GO:0045808    negative regulation of establishment of competence for transformation    Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of competence for transformation.
    GO:0042174    negative regulation of sporulation resulting in formation of a cellular spore    Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation.
    GO:0030435    sporulation resulting in formation of a cellular spore    The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SRT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg A:70 - Gly A:71   [ RasMol ]  
    Arg C:70 - Gly C:71   [ RasMol ]  
    Arg D:70 - Gly D:71   [ RasMol ]  
    Arg E:70 - Gly E:71   [ RasMol ]  
    Arg G:70 - Gly G:71   [ RasMol ]  
    Arg H:70 - Gly H:71   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]
    Biological Unit 9  [ Jena3D ]
    Biological Unit 10  [ Jena3D ]
    Biological Unit 11  [ Jena3D ]
    Biological Unit 12  [ Jena3D ]
    Biological Unit 13  [ Jena3D ]
    Biological Unit 14  [ Jena3D ]
    Biological Unit 15  [ Jena3D ]
    Biological Unit 16  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format | Biol. Unit 7 PNG format | Biol. Unit 8 PNG format | Biol. Unit 9 PNG format | Biol. Unit 10 PNG format | Biol. Unit 11 PNG format | Biol. Unit 12 PNG format | Biol. Unit 13 PNG format | Biol. Unit 14 PNG format | Biol. Unit 15 PNG format | Biol. Unit 16 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2y1r
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  CLPC_BACSU | P37571
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  MECA1_BACSU | P37958
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  CLPC_BACSU | P37571
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  MECA1_BACSU | P37958
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPC_BACSU | P37571: 2k77 2y1q 3j3r 3j3s 3j3t 3j3u 3pxg 3pxi 5hbn
        MECA1_BACSU | P37958: 3j3r 3j3s 3j3t 3j3u 3jtp 3pxg 3pxi

(-) Related Entries Specified in the PDB File

2y1q CRYSTAL STRUCTURE OF CLPC N-TERMINAL DOMAIN