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(-) Description

Title :  STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM RABBIT ENDOGENOUS LENTIVIRUS (RELIK)
 
Authors :  D. C. Goldstone, L. E. Robertson, L. F. Haire, J. P. Stoye, I. A. Taylor
Date :  07 Jun 10  (Deposition) - 22 Sep 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Retroviral Capsid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. C. Goldstone, M. W. Yap, L. E. Robertson, L. F. Haire, W. R. Taylor, A. Katzourakis, J. P. Stoye, I. A. Taylor
Structural And Functional Analysis Of Prehistoric Lentiviruses Uncovers An Ancient Molecular Interface.
Cell Host Microbe V. 8 248 2010
PubMed-ID: 20833376  |  Reference-DOI: 10.1016/J.CHOM.2010.08.006

(-) Compounds

Molecule 1 - PSIV CAPSID N-TERMINAL DOMAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: GREY MOUSE LEMUR
    Organism Scientific: MICROCEBUS MURINUS
    Organism Taxid: 30608

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2XGV)

(-) Sites  (0, 0)

(no "Site" information available for 2XGV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2XGV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:86 -Pro A:87

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2XGV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2XGV)

(-) Exons   (0, 0)

(no "Exon" information available for 2XGV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains d2xgva_ A: automated matches                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xgv A   1 PVVNRGQGWAYEPMSTRTVAAWIRQTGEKGLTSPETITYWGLISQDLSSREQVQLLEVVPGLQADKDMLGAYLEERAREWDAQPQQPLPYTSAHIRGLTGDQAFAISAQGREAAQVFRAWITQGLMNLAQLRA 133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2XGV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2XGV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Gln A:86 - Pro A:87   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2xgu STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM RABBIT ENDOGENOUS LENTIVIRUS (RELIK)
2xgy COMPLEX OF RABBIT ENDOGENOUS LENTIVIRUS (RELIK )CAPSID WITH CYCLOPHILIN A