2XDR - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE MUTANT E252A FROM PSEUDOMONAS AERUGINOSA

Authors :   A. G. Diaz-Sanchez, L. Gonzalez-Segura, E. Rudino-Pinera, A. Lira-Ro R. A. Munoz-Clares

Date :   06 May 10 (Deposition) - 22 Jun 11 (Release) - 14 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Aldehyde Oxidation, Nadph Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. G. Diaz-Sanchez, L. Gonzalez-Segura, E. Rudino-Pinera, A. Lira-Rocha, R. A. Munoz-Clares
A Novel Cysteine-Nadph Covalent Adduct In Pseudomonas Aeruginosa Betaine Aldehyde Dehydrogenase Suggests Important Roles For The Reduced Nucleotide In The Reaction Mechanism
To Be Published
PubMed: search

Molecule 1 - BETAINE ALDEHYDE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.2.1.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCALBETB
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 2-490
	Mutation	:	YES
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	BADH

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 27)

No.	Name	Count	Type	Full Name
1	GOL	14	Ligand/Ion	GLYCEROL
2	K	8	Ligand/Ion	POTASSIUM ION
3	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4	TOE	1	Ligand/Ion	2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:438 , SER A:447 , VAL A:453 , GLU A:464 , TOE A:1492 , HOH A:2530 , HOH A:2531 , HOH A:2534	BINDING SITE FOR RESIDUE GOL A1491
02	AC2	SOFTWARE	GLN A:157 , ILE A:158 , SER A:447 , GOL A:1491 , HOH A:2086 , HOH A:2259 , HOH A:2309 , HOH A:2342 , HOH A:2532 , HOH A:2533 , HOH A:2534	BINDING SITE FOR RESIDUE TOE A1492
03	AC3	SOFTWARE	THR A:26 , ILE A:27 , ASP A:93 , VAL A:180	BINDING SITE FOR RESIDUE K A1493
04	AC4	SOFTWARE	LYS A:457 , GLY A:460 , LEU B:246	BINDING SITE FOR RESIDUE K A1494
05	AC5	SOFTWARE	ILE A:149 , GLY A:150 , LYS A:176 , SER A:178 , GLU A:179 , SER A:208 , GLY A:209 , GLY A:213 , GLN A:214 , PHE A:227 , GLY A:230 , THR A:233 , VAL A:237 , HOH A:2296 , HOH A:2536 , HOH A:2537 , HOH A:2538 , HOH A:2540 , HOH A:2541 , HOH A:2542 , HOH A:2543 , HOH A:2544 , HOH A:2545	BINDING SITE FOR RESIDUE NDP A5502
06	AC6	SOFTWARE	CYS B:286 , ILE B:438 , SER B:447 , VAL B:453 , GLU B:464 , GOL B:1492 , HOH B:2351 , HOH B:2355 , HOH B:2381 , HOH B:2383	BINDING SITE FOR RESIDUE GOL B1491
07	AC7	SOFTWARE	TYR B:154 , GLN B:157 , GOL B:1491 , HOH B:2382 , HOH B:2383	BINDING SITE FOR RESIDUE GOL B1492
08	AC8	SOFTWARE	PHE B:4 , GLN B:7 , LYS B:187 , HOH B:2007 , HOH B:2014 , HOH B:2384	BINDING SITE FOR RESIDUE GOL B1493
09	AC9	SOFTWARE	GLU B:5 , GLU B:6 , GLN B:7 , LYS B:8 , TYR B:15 , HOH B:2384	BINDING SITE FOR RESIDUE GOL B1494
10	BC1	SOFTWARE	LEU A:246 , LYS B:457 , GLY B:460	BINDING SITE FOR RESIDUE K B5500
11	BC2	SOFTWARE	THR B:26 , ILE B:27 , ASP B:93 , VAL B:180	BINDING SITE FOR RESIDUE K B5501
12	BC3	SOFTWARE	ILE B:149 , GLY B:150 , LYS B:176 , SER B:178 , GLU B:179 , GLY B:207 , GLY B:209 , GLY B:213 , GLN B:214 , PHE B:227 , GLY B:229 , GLY B:230 , THR B:233 , VAL B:237 , HOH B:2385 , HOH B:2386 , HOH B:2387 , HOH B:2388 , HOH B:2390	BINDING SITE FOR RESIDUE NDP B5502
13	BC4	SOFTWARE	PHE C:4 , GLN C:7 , LYS C:187 , HOH C:2325	BINDING SITE FOR RESIDUE GOL C1491
14	BC5	SOFTWARE	GLN C:157 , VAL C:285 , GOL C:1493 , HOH C:2143 , HOH C:2146 , HOH C:2326 , HOH C:2327	BINDING SITE FOR RESIDUE GOL C1492
15	BC6	SOFTWARE	CYS C:286 , GLU C:464 , GOL C:1492 , HOH C:2174 , HOH C:2294 , HOH C:2328 , HOH C:2329	BINDING SITE FOR RESIDUE GOL C1493
16	BC7	SOFTWARE	ARG C:314 , LEU C:315 , ASP C:320 , THR C:323 , HOH C:2330	BINDING SITE FOR RESIDUE GOL C1494
17	BC8	SOFTWARE	SER C:336 , GLY C:339 , TYR C:340	BINDING SITE FOR RESIDUE GOL C1495
18	BC9	SOFTWARE	THR C:26 , ILE C:27 , ASP C:93 , VAL C:180	BINDING SITE FOR RESIDUE K C1496
19	CC1	SOFTWARE	LYS C:457 , GLY C:460 , LEU D:246	BINDING SITE FOR RESIDUE K C1497
20	CC2	SOFTWARE	ILE C:149 , GLY C:150 , LYS C:176 , SER C:178 , GLU C:179 , GLY C:207 , GLY C:209 , GLY C:213 , GLN C:214 , PHE C:227 , GLY C:229 , GLY C:230 , THR C:233 , VAL C:237 , HOH C:2332 , HOH C:2333 , HOH C:2334 , HOH C:2335 , HOH C:2336 , HOH C:2337	BINDING SITE FOR RESIDUE NDP C5502
21	CC3	SOFTWARE	GLU D:5 , GLU D:6 , GLN D:7 , LYS D:8 , TYR D:15 , HOH D:2399	BINDING SITE FOR RESIDUE GOL D1491
22	CC4	SOFTWARE	GLN D:157 , VAL D:285 , GOL D:1493 , HOH D:2283 , HOH D:2395 , HOH D:2396	BINDING SITE FOR RESIDUE GOL D1492
23	CC5	SOFTWARE	CYS D:286 , SER D:447 , GLU D:464 , GOL D:1492 , HOH D:2397	BINDING SITE FOR RESIDUE GOL D1493
24	CC6	SOFTWARE	PHE D:4 , GLU D:5 , GLN D:7 , LYS D:187 , HOH D:2398 , HOH D:2399	BINDING SITE FOR RESIDUE GOL D1494
25	CC7	SOFTWARE	THR D:26 , ILE D:27 , ASP D:93 , VAL D:180	BINDING SITE FOR RESIDUE K D1495
26	CC8	SOFTWARE	LEU C:246 , LYS D:457 , GLY D:460	BINDING SITE FOR RESIDUE K D1496
27	CC9	SOFTWARE	ILE D:149 , GLY D:150 , LYS D:176 , SER D:178 , GLU D:179 , GLY D:207 , SER D:208 , GLY D:209 , GLY D:213 , GLN D:214 , PHE D:227 , THR D:228 , GLY D:229 , GLY D:230 , THR D:233 , VAL D:237 , HOH D:2223 , HOH D:2400 , HOH D:2401 , HOH D:2404 , HOH D:2406 , HOH D:2407 , HOH D:2408 , HOH D:2410	BINDING SITE FOR RESIDUE NDP D5502

(no "SS Bond" information available for 2XDR)

(no "Cis Peptide Bond" information available for 2XDR)

(no "SAP(SNP)/Variant" information available for 2XDR)

Asymmetric/Biological Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDEHYDE_DEHYDR_GLU	PS00687	Aldehyde dehydrogenases glutamic acid active site.	BETB_PSEAE	251-258	4	A:251-258 B:251-258 C:251-258 D:251-258
2	ALDEHYDE_DEHYDR_CYS	PS00070	Aldehyde dehydrogenases cysteine active site.	BETB_PSEAE	279-290	4	A:279-290 B:279-290 C:279-290 D:279-290

(no "Exon" information available for 2XDR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:489
 aligned with BETB_PSEAE | Q9HTJ1 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           BETB_PSEAE     2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
               SCOP domains d2xdra_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....ee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhh.eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee......hhhhhhh.....eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhh.eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xdr A   2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain B from PDB  Type:PROTEIN  Length:489
 aligned with BETB_PSEAE | Q9HTJ1 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           BETB_PSEAE     2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
               SCOP domains d2xdrb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....ee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhh.eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..ee........hhhhhhh.....eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhh.eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xdr B   2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain C from PDB  Type:PROTEIN  Length:489
 aligned with BETB_PSEAE | Q9HTJ1 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           BETB_PSEAE     2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
               SCOP domains d2xdrc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eee......eeee.........eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee......hhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhh.eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee......hhhhhhh.....eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhh.eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xdr C   2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Chain D from PDB  Type:PROTEIN  Length:489
 aligned with BETB_PSEAE | Q9HTJ1 from UniProtKB/Swiss-Prot  Length:490

    Alignment length:489
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481         
           BETB_PSEAE     2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
               SCOP domains d2xdrd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------Aldedh-2xdrD01 D:15-479                                                                                                                                                                                                                                                                                                                                                                                                                                                          ----------- Pfam domains (1)
           Pfam domains (2) -------------Aldedh-2xdrD02 D:15-479                                                                                                                                                                                                                                                                                                                                                                                                                                                          ----------- Pfam domains (2)
           Pfam domains (3) -------------Aldedh-2xdrD03 D:15-479                                                                                                                                                                                                                                                                                                                                                                                                                                                          ----------- Pfam domains (3)
           Pfam domains (4) -------------Aldedh-2xdrD04 D:15-479                                                                                                                                                                                                                                                                                                                                                                                                                                                          ----------- Pfam domains (4)
         Sec.struct. author .......ee....ee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeeee..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhh....eeeee.hhhhhhhhhhhhhhhhh.eeeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee......hhhhhhh.....eeee.....hhhhhh.....eeeeeee.hhhhhhhhhh......eeeee..hhhhhhhhhhhh...eeee..............hhh.ee...hhhhhhhh.eeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE--------------------ALDEHYDE_DEH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xdr D   2 ARFEEQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIPLRETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGRENGLTTLAHYTRIKSVQVELGDYASVF 490
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ALDH-like (168)

Superfamily: ALDH-like (168)

Family: automated matches (88)

Protein domain: automated matches (88)

Pseudomonas aeruginosa [TaxId: 287] (5)

1a	d2xdra_	A:
1b	d2xdrb_	B:
1c	d2xdrc_	C:
1d	d2xdrd_	D:

(no "CATH Domain" information available for 2XDR)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ALDH-like (49)

Family: Aldedh (45)

Pseudomonas aeruginosa (3)

1a	Aldedh-2xdrD01	D:15-479
1b	Aldedh-2xdrD02	D:15-479
1c	Aldedh-2xdrD03	D:15-479
1d	Aldedh-2xdrD04	D:15-479

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (BETB_PSEAE | Q9HTJ1)

molecular function
	GO:0047105	4-trimethylammoniobutyraldehyde dehydrogenase activity	Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate.
	GO:0019145	aminobutyraldehyde dehydrogenase activity	Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+.
	GO:0008802	betaine-aldehyde dehydrogenase activity	Catalysis of the reaction: betaine aldehyde + NAD+ + H2O = betaine + NADH + H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
	GO:0019285	glycine betaine biosynthetic process from choline	The chemical reactions and pathways resulting in the formation of betaine (N-trimethylglycine) from the oxidation of choline.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NDP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TOE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]
		CC5	[ RasMol ]	+environment [ RasMol ]
		CC6	[ RasMol ]	+environment [ RasMol ]
		CC7	[ RasMol ]	+environment [ RasMol ]
		CC8	[ RasMol ]	+environment [ RasMol ]
		CC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2xdr)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2xdr
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	BETB_PSEAE \| Q9HTJ1
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.2.1.8
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	BETB_PSEAE \| Q9HTJ1
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	BETB_PSEAE \| Q9HTJ1	:	2wme 2wox 3zqa 4caz 4cbb

2wme	CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
2wox	BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA WITH NAD(P)H-CATALYTIC THIOL ADDUCT.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 27)

Sites (27, 27)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File