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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GNTR-HUTC FAMILY MEMBER YVOA FROM BACILLUS SUBTILIS
 
Authors :  M. Resch, E. Schiltz, F. Titgemeyer, Y. A. Muller
Date :  12 Oct 09  (Deposition) - 12 Jan 10  (Release) - 21 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G  (2x)
Biol. Unit 5:  H,I  (1x)
Biol. Unit 6:  J  (2x)
Keywords :  Repressor, Dna-Binding, Transcription, Transcription Regulation, Transcriptional Regulator, Gntr/Hutc Family, Chorismate Lyase Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Resch, E. Schiltz, F. Titgemeyer, Y. A. Muller
Insight Into The Induction Mechanism Of The Gntr/Hutc Bacterial Transcription Regulator Yvoa
Nucleic Acids Res. V. 38 2485 2010
PubMed-ID: 20047956  |  Reference-DOI: 10.1093/NAR/GKP1191

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA
    Chains: A, B, C, D, E, F, G, H, I, J
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Strain: 168
    Synonym: YVOA

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): AB        
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x):     EF    
Biological Unit 4 (2x):       G   
Biological Unit 5 (1x):        HI 
Biological Unit 6 (2x):          J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric Unit (1, 15)
No.NameCountTypeFull Name
1SO415Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:108 , LYS A:130 , PRO I:10 , ILE I:11 , TYR I:12BINDING SITE FOR RESIDUE SO4 I1243
02AC2SOFTWAREPRO B:10 , ILE B:11 , TYR B:12 , THR B:50 , GLN D:108 , LYS D:130BINDING SITE FOR RESIDUE SO4 B1243
03AC3SOFTWAREGLN B:108 , LYS B:130 , PRO D:10 , ILE D:11 , TYR D:12 , THR D:50BINDING SITE FOR RESIDUE SO4 D1243
04AC4SOFTWARESER B:88 , PHE B:89 , THR B:90 , ARG B:133 , ARG B:135 , SER B:165 , ILE B:166 , TYR B:167 , HOH B:2098 , HOH B:2109BINDING SITE FOR RESIDUE SO4 B1244
05AC5SOFTWAREPRO C:10 , ILE C:11 , TYR C:12 , THR C:50 , GLN F:108 , LYS F:130BINDING SITE FOR RESIDUE SO4 C1243
06AC6SOFTWAREGLN C:108 , LYS C:130 , PRO F:10 , ILE F:11 , TYR F:12 , THR F:50 , HOH F:2092BINDING SITE FOR RESIDUE SO4 F1243
07AC7SOFTWAREGLN E:108 , PRO G:10 , ILE G:11 , TYR G:12BINDING SITE FOR RESIDUE SO4 G1243
08AC8SOFTWARESER C:88 , PHE C:89 , THR C:90 , ARG C:133 , ARG C:135 , SER C:165 , ILE C:166 , TYR C:167 , HOH C:2103BINDING SITE FOR RESIDUE SO4 C1244
09AC9SOFTWARESER D:88 , PHE D:89 , THR D:90 , ARG D:133 , ARG D:135 , SER D:164 , SER D:165 , ILE D:166 , TYR D:167 , HOH D:2113BINDING SITE FOR RESIDUE SO4 D1244
10BC1SOFTWARESER E:88 , PHE E:89 , THR E:90 , ARG E:133 , ARG E:135 , SER E:164 , SER E:165 , ILE E:166 , TYR E:167 , HOH E:2050BINDING SITE FOR RESIDUE SO4 E1243
11BC2SOFTWARESER F:88 , PHE F:89 , THR F:90 , ARG F:133 , ARG F:135 , SER F:165 , ILE F:166 , TYR F:167 , HOH F:2093BINDING SITE FOR RESIDUE SO4 F1244
12BC3SOFTWARESER G:88 , PHE G:89 , THR G:90 , ARG G:133 , ARG G:135 , SER G:165 , ILE G:166 , TYR G:167 , HOH G:2038BINDING SITE FOR RESIDUE SO4 G1244
13BC4SOFTWARESER I:88 , PHE I:89 , THR I:90 , ARG I:133 , ARG I:135 , SER I:164 , SER I:165 , ILE I:166 , TYR I:167 , HOH I:2080BINDING SITE FOR RESIDUE SO4 I1244
14BC5SOFTWARESER A:88 , PHE A:89 , THR A:90 , ARG A:133 , ARG A:135 , SER A:165 , ILE A:166 , TYR A:167 , HOH A:2070BINDING SITE FOR RESIDUE SO4 A1244
15BC6SOFTWAREPRO A:10 , ILE A:11 , TYR A:12 , THR A:50 , GLN I:108 , LYS I:130BINDING SITE FOR RESIDUE SO4 A1245

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WV0)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1His A:124 -Pro A:125
2His B:124 -Pro B:125
3His C:124 -Pro C:125
4His D:124 -Pro D:125
5His E:124 -Pro E:125
6His F:124 -Pro F:125
7His G:124 -Pro G:125
8His I:124 -Pro I:125
9His J:124 -Pro J:125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WV0)

(-) PROSITE Motifs  (1, 10)

Asymmetric Unit (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  10A:9-77
B:9-77
C:9-77
D:9-77
E:9-77
F:9-77
G:9-77
H:9-77
I:9-77
J:9-77
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2A:9-77
B:9-77
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2-
-
C:9-77
D:9-77
-
-
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2-
-
-
-
E:9-77
F:9-77
-
-
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:9-77
-
-
-
Biological Unit 5 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
H:9-77
I:9-77
-
Biological Unit 6 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HTH_GNTRPS50949 GntR-type HTH domain profile.YVOA_BACSU9-77
 
 
 
 
 
 
 
 
 		  2-
-
-
-
-
-
-
-
-
J:9-77

(-) Exons   (0, 0)

(no "Exon" information available for 2WV0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRLS 243
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.......ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee... Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee--------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: A:9-77 UniProt: 9-77                                  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 A   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRLS 243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   


Chain B from PDB  Type:PROTEIN  Length:242
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.......ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: B:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 B   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  


Chain C from PDB  Type:PROTEIN  Length:242
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.......ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: C:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 C   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  


Chain D from PDB  Type:PROTEIN  Length:242
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.......ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: D:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 D   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  


Chain E from PDB  Type:PROTEIN  Length:234
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:240
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242
           YVOA_BACSU     3 INKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
     Sec.struct. author (1) .......hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh...------........hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -----------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------HTH_GNTR  PDB: E:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wv0 E   3 INKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLL------GTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    12        22        32        42        52        62 |      72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242
                                                                                        64     71                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:237
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.-----.ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: F:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 F   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR-----TFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60     |   - |      80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
                                                                                            66    72                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:237
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:241
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           YVOA_BACSU     2 NINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) ........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhh...ee..----.ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee.............. Sec.struct. author (1)
     Sec.struct. author (2) ------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------HTH_GNTR  PDB: G:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 G   2 NINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL----TFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    11        21        31        41        51        61     |   -|       81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
                                                                                            67   72                                                                                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:224
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh..........hhhhhhhh--------hhhhhhhhh...ee..----.ee....hhhhhh...hhhhhhhh.......eeeeeee...hhhhhhhh------..eeeeeeeee..eeeeeeeee.hhhhh..........hhhhhhhhhh...eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: H:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 H   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQ--------RQALSNLVNEGLLYRL----TFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAIL------SIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40  |      - |      60      |  - |      80        90       100       110       120      |130       140       150       160       170       180       190       200       210       220       230       240  
                                                                     43       52             67   72                                             120    127                                                                                                                   


Chain I from PDB  Type:PROTEIN  Length:242
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh..ee.......ee....hhhhhh...hhhhhhhhh......eeeeeeeee.hhhhhhhh......eeeeeeeeeee..----------hhhhh...hhhhhh.hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeee......eeeee... Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------------------------------------------------------------------------------------------------------eeeeeeeeeee-------------------------------------------------------------------------------------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: I:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 I   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  


Chain J from PDB  Type:PROTEIN  Length:235
 aligned with YVOA_BACSU | O34817 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240  
           YVOA_BACSU     1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTFVHYMDRL 242
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------GntR-2wv0J11 J:11-74                                            --------------------UTRA-2wv0J01 J:95-234                                                                                                                       -------- Pfam domains (1)
           Pfam domains (2) ----------GntR-2wv0J12 J:11-74                                            --------------------UTRA-2wv0J02 J:95-234                                                                                                                       -------- Pfam domains (2)
           Pfam domains (3) ----------GntR-2wv0J13 J:11-74                                            --------------------UTRA-2wv0J03 J:95-234                                                                                                                       -------- Pfam domains (3)
           Pfam domains (4) ----------GntR-2wv0J14 J:11-74                                            --------------------UTRA-2wv0J04 J:95-234                                                                                                                       -------- Pfam domains (4)
           Pfam domains (5) ----------GntR-2wv0J15 J:11-74                                            --------------------UTRA-2wv0J05 J:95-234                                                                                                                       -------- Pfam domains (5)
           Pfam domains (6) ----------GntR-2wv0J16 J:11-74                                            --------------------UTRA-2wv0J06 J:95-234                                                                                                                       -------- Pfam domains (6)
           Pfam domains (7) ----------GntR-2wv0J17 J:11-74                                            --------------------UTRA-2wv0J07 J:95-234                                                                                                                       -------- Pfam domains (7)
           Pfam domains (8) ----------GntR-2wv0J18 J:11-74                                            --------------------UTRA-2wv0J08 J:95-234                                                                                                                       -------- Pfam domains (8)
           Pfam domains (9) ----------GntR-2wv0J19 J:11-74                                            --------------------UTRA-2wv0J09 J:95-234                                                                                                                       -------- Pfam domains (9)
          Pfam domains (10) ----------GntR-2wv0J20 J:11-74                                            --------------------UTRA-2wv0J10 J:95-234                                                                                                                       -------- Pfam domains (10)
         Sec.struct. author .........hhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhh...ee.......ee....hhhhhh...hhhhhhhh..........ee.....hhhhhh..........eeeeeeeee..eeeeeeeeee...-----.......hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....--.eeeeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------HTH_GNTR  PDB: J:9-77 UniProt: 9-77                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wv0 J   1 MNINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFE-----NESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGT--EHAKSVYRGDRYTFVHYMDRL 242
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 |     160       170       180       190       200       210        |- |     230       240  
                                                                                                                                                                                 152   158                                                          219  |                    
                                                                                                                                                                                                                                                       222
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WV0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WV0)

(-) Pfam Domains  (2, 20)

Asymmetric Unit
(-)
Clan: Chor_lyase (11)
(-)
Family: UTRA (7)
(-)
Bacillus subtilis (2)
1aUTRA-2wv0J01J:95-234
1bUTRA-2wv0J02J:95-234
1cUTRA-2wv0J03J:95-234
1dUTRA-2wv0J04J:95-234
1eUTRA-2wv0J05J:95-234
1fUTRA-2wv0J06J:95-234
1gUTRA-2wv0J07J:95-234
1hUTRA-2wv0J08J:95-234
1iUTRA-2wv0J09J:95-234
1jUTRA-2wv0J10J:95-234
(-)
Clan: HTH (544)
(-)
Family: GntR (4)
(-)
Bacillus subtilis (1)
2aGntR-2wv0J11J:11-74
2bGntR-2wv0J12J:11-74
2cGntR-2wv0J13J:11-74
2dGntR-2wv0J14J:11-74
2eGntR-2wv0J15J:11-74
2fGntR-2wv0J16J:11-74
2gGntR-2wv0J17J:11-74
2hGntR-2wv0J18J:11-74
2iGntR-2wv0J19J:11-74
2jGntR-2wv0J20J:11-74

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (YVOA_BACSU | O34817)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YVOA_BACSU | O34817: 4u0v 4u0w 4u0y 4wwc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2WV0)