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Biol. Unit 5
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Asym.Unit (758 KB)
Biol.Unit 1 (162 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (154 KB)
Biol.Unit 4 (150 KB)
Biol.Unit 5 (143 KB)
Biol.Unit 6 (130 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GNTR-HUTC FAMILY MEMBER YVOA FROM BACILLUS SUBTILIS
Authors
:
M. Resch, E. Schiltz, F. Titgemeyer, Y. A. Muller
Date
:
12 Oct 09 (Deposition) - 12 Jan 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G (2x)
Biol. Unit 5: H,I (1x)
Biol. Unit 6: J (2x)
Keywords
:
Repressor, Dna-Binding, Transcription, Transcription Regulation, Transcriptional Regulator, Gntr/Hutc Family, Chorismate Lyase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Resch, E. Schiltz, F. Titgemeyer, Y. A. Muller
Insight Into The Induction Mechanism Of The Gntr/Hutc Bacterial Transcription Regulator Yvoa
Nucleic Acids Res. V. 38 2485 2010
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
View:
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No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: BC4 (SOFTWARE)
3: BC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:108 , LYS A:130 , PRO I:10 , ILE I:11 , TYR I:12
BINDING SITE FOR RESIDUE SO4 I1243
2
BC4
SOFTWARE
SER I:88 , PHE I:89 , THR I:90 , ARG I:133 , ARG I:135 , SER I:164 , SER I:165 , ILE I:166 , TYR I:167 , HOH I:2080
BINDING SITE FOR RESIDUE SO4 I1244
3
BC6
SOFTWARE
PRO A:10 , ILE A:11 , TYR A:12 , THR A:50 , GLN I:108 , LYS I:130
BINDING SITE FOR RESIDUE SO4 A1245
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_GNTR (H:9-77,I:9-77)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_GNTR
PS50949
GntR-type HTH domain profile.
YVOA_BACSU
9-77
2
-
-
-
-
-
-
-
H:9-77
I:9-77
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_UTRA_2wv0J01 (J:95-234)
1b: PFAM_UTRA_2wv0J02 (J:95-234)
1c: PFAM_UTRA_2wv0J03 (J:95-234)
1d: PFAM_UTRA_2wv0J04 (J:95-234)
1e: PFAM_UTRA_2wv0J05 (J:95-234)
1f: PFAM_UTRA_2wv0J06 (J:95-234)
1g: PFAM_UTRA_2wv0J07 (J:95-234)
1h: PFAM_UTRA_2wv0J08 (J:95-234)
1i: PFAM_UTRA_2wv0J09 (J:95-234)
1j: PFAM_UTRA_2wv0J10 (J:95-234)
2a: PFAM_GntR_2wv0J11 (J:11-74)
2b: PFAM_GntR_2wv0J12 (J:11-74)
2c: PFAM_GntR_2wv0J13 (J:11-74)
2d: PFAM_GntR_2wv0J14 (J:11-74)
2e: PFAM_GntR_2wv0J15 (J:11-74)
2f: PFAM_GntR_2wv0J16 (J:11-74)
2g: PFAM_GntR_2wv0J17 (J:11-74)
2h: PFAM_GntR_2wv0J18 (J:11-74)
2i: PFAM_GntR_2wv0J19 (J:11-74)
2j: PFAM_GntR_2wv0J20 (J:11-74)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Chor_lyase
(11)
Family
:
UTRA
(7)
Bacillus subtilis
(2)
1a
UTRA-2wv0J01
J:95-234
1b
UTRA-2wv0J02
J:95-234
1c
UTRA-2wv0J03
J:95-234
1d
UTRA-2wv0J04
J:95-234
1e
UTRA-2wv0J05
J:95-234
1f
UTRA-2wv0J06
J:95-234
1g
UTRA-2wv0J07
J:95-234
1h
UTRA-2wv0J08
J:95-234
1i
UTRA-2wv0J09
J:95-234
1j
UTRA-2wv0J10
J:95-234
Clan
:
HTH
(544)
Family
:
GntR
(4)
Bacillus subtilis
(1)
2a
GntR-2wv0J11
J:11-74
2b
GntR-2wv0J12
J:11-74
2c
GntR-2wv0J13
J:11-74
2d
GntR-2wv0J14
J:11-74
2e
GntR-2wv0J15
J:11-74
2f
GntR-2wv0J16
J:11-74
2g
GntR-2wv0J17
J:11-74
2h
GntR-2wv0J18
J:11-74
2i
GntR-2wv0J19
J:11-74
2j
GntR-2wv0J20
J:11-74
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Asym.Unit (758 KB)
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