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(-) Description

Title :  CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY
 
Authors :  H. J. Lee, B. Rakic, M. Gilbert, W. W. Wakarchuk, S. G. Withers, N. C. J. S
Date :  23 Jun 09  (Deposition) - 30 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transferase, Enzyme, Acetyltransferase, Left-Handed Beta Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. J. Lee, B. Rakic, M. Gilbert, W. W. Wakarchuk, S. G. Withers, N. C. J. Strynadka
Structural And Kinetic Characterizations Of The Polysialic Acid O-Acetyltransferase Oatwy From Neisseria Meningitidis.
J. Biol. Chem. V. 284 24501 2009
PubMed-ID: 19525232  |  Reference-DOI: 10.1074/JBC.M109.006049

(-) Compounds

Molecule 1 - POLYSIALIC ACID O-ACETYLTRANSFERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28
    Expression System Strain: DE3
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: NEISSERIA MENINGITIDIS SEROGROUP Y
    Organism Taxid: 648194
    Other Details: LEFT-HANDED BETA HELIX
    Strain: 406Y

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric/Biological Unit (3, 13)
No.NameCountTypeFull Name
1ACO3Ligand/IonACETYL COENZYME *A
2ACT3Ligand/IonACETATE ION
3EDO7Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:197 , LYS A:198 , MET A:199 , TYR A:200 , HOH A:2110 , MET B:120BINDING SITE FOR RESIDUE ACT A1215
02AC2SOFTWARESER A:36 , PHE A:60 , GLN A:81BINDING SITE FOR RESIDUE ACT A1216
03AC3SOFTWAREASN A:16 , ALA A:62 , ASP A:63 , ALA A:84 , HOH A:2021BINDING SITE FOR RESIDUE EDO A1217
04AC4SOFTWAREMET A:5 , HOH A:2112BINDING SITE FOR RESIDUE EDO A1218
05AC5SOFTWARELYS A:154 , GLY A:155 , TYR A:171 , SER A:173BINDING SITE FOR RESIDUE EDO A1219
06AC6SOFTWAREASN A:34 , ASN A:35 , SER A:36 , ASN A:56 , ILE A:57 , THR A:58 , GLN A:81 , LYS A:100BINDING SITE FOR RESIDUE EDO A1220
07AC7SOFTWAREARG A:116 , ASP A:119 , HIS A:121 , ILE A:123 , ASN A:133 , LEU A:153 , LYS A:154 , TYR A:171 , LYS A:172 , HOH A:2113 , HOH A:2114 , HOH A:2115 , HOH A:2116 , HOH A:2117 , ALA C:110 , TRP C:145 , GLY C:147 , ARG C:148 , VAL C:163 , GLY C:165 , SER C:166 , VAL C:180 , GLY C:183 , VAL C:189 , LYS C:190 , ASN C:192 , HOH C:2047BINDING SITE FOR RESIDUE ACO A1221
08AC8SOFTWAREMET A:199 , HOH A:2107 , ALA B:96 , GLU B:97 , HOH B:2055BINDING SITE FOR RESIDUE EDO B1216
09AC9SOFTWAREASN B:90 , GLY B:91 , GLY B:112 , TYR B:113BINDING SITE FOR RESIDUE EDO B1217
10BC1SOFTWAREMET A:108 , TRP A:145 , GLY A:147 , ARG A:148 , VAL A:163 , GLY A:165 , SER A:166 , VAL A:180 , GLY A:183 , VAL A:189 , ARG B:116 , ASP B:119 , HIS B:121 , ILE B:123 , ASN B:133 , LYS B:154 , TYR B:171 , LYS B:172 , LYS B:175 , HOH B:2037 , HOH B:2056 , HOH B:2058BINDING SITE FOR RESIDUE ACO B1218
11BC2SOFTWAREALA C:110 , HIS C:111 , ARG C:148BINDING SITE FOR RESIDUE ACT C1216
12BC3SOFTWAREMET A:120 , ARG C:197 , LYS C:198 , MET C:199 , TYR C:200BINDING SITE FOR RESIDUE EDO C1217
13BC4SOFTWAREMET B:108 , ALA B:110 , TRP B:145 , GLY B:147 , ARG B:148 , VAL B:163 , GLY B:165 , SER B:166 , GLY B:183 , VAL B:189 , LYS B:190 , ARG C:116 , ASP C:119 , HIS C:121 , ILE C:123 , ASN C:133 , LYS C:154 , TYR C:171 , HOH C:2029 , HOH C:2036 , HOH C:2071 , HOH C:2072 , HOH C:2073 , HOH C:2075 , HOH C:2076 , HOH C:2077BINDING SITE FOR RESIDUE ACO C1218

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WLF)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:184 -Pro A:185
2Ser B:184 -Pro B:185
3Ser C:184 -Pro C:185

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WLF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WLF)

(-) Exons   (0, 0)

(no "Exon" information available for 2WLF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
 aligned with OATWY_NEIME | Q93S40 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:210
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214
          OATWY_NEIME     5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVENMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFY 214
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee....eeee.........eeeee....eeee....eee..eeeee....eeee....eee.eeeee....eeee....ee..eeeee....eeee....ee...eeee......eee............eee....ee....ee....ee....ee....ee........eeee....eeeee.eee........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wlf A   5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFY 214
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with OATWY_NEIME | Q93S40 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:211
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214 
          OATWY_NEIME     5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVENMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFYK 215
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee.........eeeee....eeee....eee..eeeee....eeee....eee.eeeee....eeee....ee..eeeee....eeee....ee...eeee......eee............eee...eee....ee....ee...eee....ee........eeee....eeeee.eee........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wlf B   5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFYK 215
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214 


Chain C from PDB  Type:PROTEIN  Length:211
 aligned with OATWY_NEIME | Q93S40 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:211
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214 
          OATWY_NEIME     5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVENMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFYK 215
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee.........eeeee....eeee....eee..eeeee....eeee....eee.eeeeee...eeee....ee..eeeee....eeee....ee...eeee......eee............eee...eee....ee....ee...eee....ee........eeee....eeeee.eee........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wlf C   5 MYSEQGINNTINISTTSLTNATQLTVIGNNNSVYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKENIVWGRKMYHSTMYDDPTLNEFYK 215
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WLF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WLF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WLF)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (OATWY_NEIME | Q93S40)
molecular function
    GO:0050208    polysialic-acid O-acetyltransferase activity    Catalysis of the reaction: acetyl-CoA + an alpha-2,8-linked polymer of sialic acid = CoA + polysialic acid acetylated at O-7 or O-9.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0070207    protein homotrimerization    The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OATWY_NEIME | Q93S40: 2wlc 2wld 2wle 2wlg

(-) Related Entries Specified in the PDB File

2wlc CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY
2wld CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY
2wle CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY
2wlg CRYSTALLOGRAPHIC ANALYSIS OF THE POLYSIALIC ACID O-ACETYLTRANSFERASE OATWY