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(-) Description

Title :  CALCIUM BOUND LIPL32
 
Authors :  J. -Y. Tung, C. -W. Yang, Y. -J. Sun
Date :  07 Apr 09  (Deposition) - 24 Nov 09  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (2x)
Keywords :  Fibronectin, Lipoprotein, Calcium Binding, Extracellular Matrix Outer Membrane Protein, Metal Binding Protein, Ca2+-Bound (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -Y. Tung, C. -W. Yang, S. Chou, C. Lin, Y. -J. Sun
Calcium Binds To Lipl32, A Lipoprotein From Pathogenic Leptospira, And Modulates Fibronectin Binding.
J. Biol. Chem. V. 285 3245 2010
PubMed-ID: 19948735  |  Reference-DOI: 10.1074/JBC.M109.006320

(-) Compounds

Molecule 1 - LIPL32
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSETC
    Expression System Strain: BL21(DE3) PLYS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 20-266
    Organism Scientific: LEPTOSPIRA SANTAROSAI SEROVAR SHERMANI
    Organism Taxid: 293071

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (2x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric Unit (2, 30)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
2MSE25Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 50)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MSE50Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:113 , THR A:114 , ASP A:145 , ASP A:146 , TYR A:159BINDING SITE FOR RESIDUE CA A1250
2AC2SOFTWAREASP B:113 , THR B:114 , ASP B:145 , ASP B:146 , TYR B:159BINDING SITE FOR RESIDUE CA B1250
3AC3SOFTWAREASP C:113 , THR C:114 , ASP C:145 , ASP C:146 , TYR C:159BINDING SITE FOR RESIDUE CA C1250
4AC4SOFTWAREASP D:113 , THR D:114 , ASP D:145 , ASP D:146 , TYR D:159BINDING SITE FOR RESIDUE CA D1250
5AC5SOFTWAREASP E:113 , THR E:114 , ASP E:145 , ASP E:146 , TYR E:159BINDING SITE FOR RESIDUE CA E1250

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WFK)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:80 -Pro A:81
2Asn A:169 -Pro A:170
3Ser B:80 -Pro B:81
4Ser C:80 -Pro C:81
5Ser D:80 -Pro D:81
6Arg E:-1 -Pro E:0
7Ser E:80 -Pro E:81
8Asn E:169 -Pro E:170

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WFK)

(-) Exons   (0, 0)

(no "Exon" information available for 2WFK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with Q6S9S1_9LEPT | Q6S9S1 from UniProtKB/TrEMBL  Length:266

    Alignment length:256
                                                                                                                                                                                                                                                                                       266  
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262   |  
         Q6S9S1_9LEPT    13 FASITACGAFGGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAA--   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeeeeee.....eeeeeeee...eeeeeeee.......eee...eeeeeeeeee.....eeeeee..............eehhhhhhh............eeeeeee.......hhhhhhhh...eeeeee................eeeeee........hhhhh.hhhhh...eeeeeeeee.......eeeeeeee............eee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wfk A  -5 DRWIRPRGAFGGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAASD 250
                                     4        14        24        34        44        54        64        74   |    84        94       104   |   114      |124|      134       144       154       164       174       184       194       204       214       224       234       244      
                                                                                                          74-MSE                           108-MSE      121-MSE                                                                                                                             
                                                                                                              78-MSE                                        125-MSE                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:233
 aligned with Q6S9S1_9LEPT | Q6S9S1 from UniProtKB/TrEMBL  Length:266

    Alignment length:246
                                                                                                                                                                                                                                                                             266  
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262   |  
         Q6S9S1_9LEPT    23 GGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAA--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeee.....eeeeeeee...eeeeeeee.......eee...eeeeeeeeee.....eeeeee..............eehhhhhhh............eeeeeee.......hhhhhhhh...eeeeee................eeeeee..-------------.......eeeeeeeee.......eeeeeeee............eee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wfk B   5 GGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIP-------------TKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAASD 250
                                    14        24        34        44        54        64        74   |    84        94       104   |   114      |124|      134       144       154       164   |     -       184       194       204       214       224       234       244      
                                                                                                74-MSE                           108-MSE      121-MSE                                        168           182                                                                    
                                                                                                    78-MSE                                        125-MSE                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:233
 aligned with Q6S9S1_9LEPT | Q6S9S1 from UniProtKB/TrEMBL  Length:266

    Alignment length:244
                                                                                                                                                                                                                                                                            266 
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  | 
         Q6S9S1_9LEPT    24 GLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAA-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.....eeeeeeee..eeeeeeeee.......eee...eeeeeeeeee.....eeeeee..............eehhhhhhh............eeeeeee.......hhhhhhhh...eeeeee................eeeeee.-----------..hhhhh...eeeeeeeee.......eeeeeeeee...........eee.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wfk C   6 GLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKI-----------NIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAAS 249
                                    15        25        35        45        55        65        75  |     85        95       105  |    115     | 125       135       145       155       165 |       -   |   185       195       205       215       225       235       245    
                                                                                               74-MSE                           108-MSE      121-MSE                                       167         179                                                                      
                                                                                                   78-MSE                                        125-MSE                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:231
 aligned with Q6S9S1_9LEPT | Q6S9S1 from UniProtKB/TrEMBL  Length:266

    Alignment length:245
                                                                                                                                                                                                                                                                             266 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262   | 
         Q6S9S1_9LEPT    23 GGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAA-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeee......eeeeeee...eeeeeeee.......eee...eeeeeeeeee......eeeee..............eehhhhhhh............eeeeeee.......hhhhhhhh...eeeeee................eeeee--------------.........eeeeeeeee.......eeeeeeee............eee.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wfk D   5 GGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRI--------------IDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAAS 249
                                    14        24        34        44        54        64        74   |    84        94       104   |   114      |124|      134       144       154       164|        -     | 184       194       204       214       224       234       244     
                                                                                                74-MSE                           108-MSE      121-MSE                                     165            180                                                                     
                                                                                                    78-MSE                                        125-MSE                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:255
 aligned with Q6S9S1_9LEPT | Q6S9S1 from UniProtKB/TrEMBL  Length:266

    Alignment length:255
                                                                                                                                                                                                                                                                                      266  
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  |  
         Q6S9S1_9LEPT    14 ASITACGAFGGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGEIGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAA--   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------Lipl32-2wfkE01 E:27-224                                                                                                                                                                               -------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------Lipl32-2wfkE02 E:27-224                                                                                                                                                                               -------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------Lipl32-2wfkE03 E:27-224                                                                                                                                                                               -------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------Lipl32-2wfkE04 E:27-224                                                                                                                                                                               -------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------Lipl32-2wfkE05 E:27-224                                                                                                                                                                               -------------------------- Pfam domains (5)
         Sec.struct. author ...............eeeeeeeeee......eeeeeee...eeeeeeee.......eee...eeeeeeeeee.....eeeeee..............eehhhhhhh............eeeeeee.......hhhhhhhh...eeeeee................eeeeee......hhhhhh..hhhhh...eeeeeeeee.......eeeeeeee............eee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wfk E  -4 RWIRPRGAFGGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEmGVRmISPTGEIGEPGDGDLVSDAFKAATPEEKSmPHWFDTWIRVERmSAImPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTRIKIPNPPKSFDDLKNIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAASD 250
                                     5        15        25        35        45        55        65        75  |     85        95       105  |    115     | 125       135       145       155       165       175       185       195       205       215       225       235       245     
                                                                                                         74-MSE                           108-MSE      121-MSE                                                                                                                             
                                                                                                             78-MSE                                        125-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WFK)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: Lipl32] (2)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q6S9S1_9LEPT | Q6S9S1)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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