2VXF - JenaLib

Title :   SOLUTION STRUCTURE OF THE LSM-DOMAIN OF ZEBRAFISH RAP55

Authors :   F. Tritschler, M. Coles, V. Truffault

Date :   03 Jul 08 (Deposition) - 16 Sep 08 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Lsm Proteins, Translational Repression, Transcription, Edc3, Rap55, Car-1, P-Bodies, Decapping, Mrna Decay (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Tritschler, A. Eulalio, S. Helms, S. Schmidt, M. Coles, O. Weichenrieder, E. Izaurralde, V. Truffault
Similar Modes Of Interaction Enable Trailer Hitch And Edc3 To Associate With Dcp1 And Me31B In Distinct Protein Complexes.
Mol. Cell. Biol. V. 28 6695 2008
PubMed-ID: 18765641 | Reference-DOI: 10.1128/MCB.00759-08

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:88
 aligned with Q7SXR4_DANRE | Q7SXR4 from UniProtKB/TrEMBL  Length:85

    Alignment length:88
                               1                                                                                    
                               |     7        17        27        37        47        57        67        77        
          Q7SXR4_DANRE    - ---MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKPIM 85
               SCOP domains d2vxfa_ A: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----LSM14-2vxfA01 A:2-85                                                                 Pfam domains
         Sec.struct. author ..hhhhhh.....eeeeee....eeeeeeeeee....eeeeeeeee..................eeeeeee...eeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  2vxf A -2 LEDPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKPIM 85
                                     7        17        27        37        47        57        67        77

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (3, 3)

NMR Structure(hide GO term definitions)

Chain A (Q7SXR4_DANRE | Q7SXR4)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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