2VOM - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURAL BASIS OF HUMAN TRIOSEPHOSPHATE ISOMERASE DEFICIENCY. MUTATION E104D AND CORRELATION TO SOLVENT PERTURBATION.

Authors :   C. Rodriguez-Almazan, R. Arreola-Alemon, D. Rodriguez-Larrea, B. Aguirre-Lopez, M. T. De Gomez-Puyou, R. Perez-Montfort, M. Costas, A. Gomez-Puyou, A. Torres-Larios

Date :   19 Feb 08 (Deposition) - 17 Jun 08 (Release) - 29 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Isomerase, Alternative Splicing, Fatty Acid Biosynthesis, Lipid Synthesis, Disease Mutation, Pentose Shunt, Phosphoprotein, Gluconeogenesis, Glycolysis, Acetylation, Polymorphism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Rodriguez-Almazan, R. Arreola-Alemon, D. Rodriguez-Larrea, B. Aguirre-Lopez, M. T. De Gomez-Puyou, R. Perez-Montfort, M. Costas, A. Gomez-Puyou, A. Torres-Larios
Structural Basis Of Human Triosephosphate Isomerase Deficiency: Mutation E104D Is Related To Alterations Of A Conserved Water Network At The Dimer Interface.
J. Biol. Chem. V. 283 23254 2008
PubMed-ID: 18562316 | Reference-DOI: 10.1074/JBC.M802145200

Molecule 1 - TRIOSEPHOSPHATE ISOMERASE
	Chains	:	A, B, C, D
	EC Number	:	5.3.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET3B
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Fragment	:	RESIDUES 2-249
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TIM

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2VOM)

(no "Site" information available for 2VOM)

(no "SS Bond" information available for 2VOM)

(no "Cis Peptide Bond" information available for 2VOM)

Asymmetric Unit (8, 32)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007534	C	79	Y	TPIS_HUMAN	Disease (TPID)	121964848	A/B/C/D	C	41	Y
2	UniProt	VAR_007535	G	110	A	TPIS_HUMAN	Disease (TPID)	---	A/B/C/D	G	72	A
3	UniProt	VAR_007536	E	142	D	TPIS_HUMAN	Disease (TPID)	121964845	A/B/C/D	D	104	D
4	UniProt	VAR_007537	G	160	R	TPIS_HUMAN	Polymorphism	121964846	A/B/C/D	G	122	R
5	UniProt	VAR_007538	V	192	M	TPIS_HUMAN	Disease (TPID)	188138723	A/B/C/D	V	154	M
6	UniProt	VAR_007539	I	208	V	TPIS_HUMAN	Disease (TPID)	121964849	A/B/C/D	I	170	V
7	UniProt	VAR_007540	V	269	M	TPIS_HUMAN	Disease (TPID)	---	A/B/C/D	V	231	M
8	UniProt	VAR_007541	F	278	L	TPIS_HUMAN	Disease (TPID)	121964847	A/B/C/D	F	240	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007534	C	79	Y	TPIS_HUMAN	Disease (TPID)	121964848	A/B	C	41	Y
2	UniProt	VAR_007535	G	110	A	TPIS_HUMAN	Disease (TPID)	---	A/B	G	72	A
3	UniProt	VAR_007536	E	142	D	TPIS_HUMAN	Disease (TPID)	121964845	A/B	D	104	D
4	UniProt	VAR_007537	G	160	R	TPIS_HUMAN	Polymorphism	121964846	A/B	G	122	R
5	UniProt	VAR_007538	V	192	M	TPIS_HUMAN	Disease (TPID)	188138723	A/B	V	154	M
6	UniProt	VAR_007539	I	208	V	TPIS_HUMAN	Disease (TPID)	121964849	A/B	I	170	V
7	UniProt	VAR_007540	V	269	M	TPIS_HUMAN	Disease (TPID)	---	A/B	V	231	M
8	UniProt	VAR_007541	F	278	L	TPIS_HUMAN	Disease (TPID)	121964847	A/B	F	240	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (8, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_007534	C	79	Y	TPIS_HUMAN	Disease (TPID)	121964848	C/D	C	41	Y
2	UniProt	VAR_007535	G	110	A	TPIS_HUMAN	Disease (TPID)	---	C/D	G	72	A
3	UniProt	VAR_007536	E	142	D	TPIS_HUMAN	Disease (TPID)	121964845	C/D	D	104	D
4	UniProt	VAR_007537	G	160	R	TPIS_HUMAN	Polymorphism	121964846	C/D	G	122	R
5	UniProt	VAR_007538	V	192	M	TPIS_HUMAN	Disease (TPID)	188138723	C/D	V	154	M
6	UniProt	VAR_007539	I	208	V	TPIS_HUMAN	Disease (TPID)	121964849	C/D	I	170	V
7	UniProt	VAR_007540	V	269	M	TPIS_HUMAN	Disease (TPID)	---	C/D	V	231	M
8	UniProt	VAR_007541	F	278	L	TPIS_HUMAN	Disease (TPID)	121964847	C/D	F	240	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TIM_2	PS51440	Triosephosphate isomerase (TIM) family profile.	TPIS_HUMAN	43-284	4	A:5-246 B:5-246 C:5-246 D:5-245
2	TIM_1	PS00171	Triosephosphate isomerase active site.	TPIS_HUMAN	201-211	4	A:163-173 B:163-173 C:163-173 D:163-173

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TIM_2	PS51440	Triosephosphate isomerase (TIM) family profile.	TPIS_HUMAN	43-284	2	A:5-246 B:5-246 - -
2	TIM_1	PS00171	Triosephosphate isomerase active site.	TPIS_HUMAN	201-211	2	A:163-173 B:163-173 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TIM_2	PS51440	Triosephosphate isomerase (TIM) family profile.	TPIS_HUMAN	43-284	2	- - C:5-246 D:5-245
2	TIM_1	PS00171	Triosephosphate isomerase active site.	TPIS_HUMAN	201-211	2	- - C:163-173 D:163-173

Asymmetric Unit (7, 28)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000229270	1a	ENSE00001164420	chr12:6976283-6976845	563	TPIS_HUMAN	1-76	76	4	A:4-38 B:3-38 C:3-38 D:4-38	35 36 36 35
1.2e	ENST00000229270	2e	ENSE00000716159	chr12:6978028-6978151	124	TPIS_HUMAN	76-117	42	4	A:38-79 B:38-79 C:38-79 D:38-79	42 42 42 42
1.3	ENST00000229270	3	ENSE00000716160	chr12:6978263-6978347	85	TPIS_HUMAN	117-145	29	4	A:79-107 B:79-107 C:79-107 D:79-107	29 29 29 29
1.4b	ENST00000229270	4b	ENSE00000716161	chr12:6978422-6978554	133	TPIS_HUMAN	146-190	45	4	A:108-152 B:108-152 C:108-152 D:108-152	45 45 45 45
1.5c	ENST00000229270	5c	ENSE00000716162	chr12:6978852-6978937	86	TPIS_HUMAN	190-218	29	4	A:152-180 B:152-180 C:152-180 D:152-180	29 29 29 29
1.6d	ENST00000229270	6d	ENSE00000716163	chr12:6979213-6979300	88	TPIS_HUMAN	219-248	30	4	A:181-210 B:181-210 C:181-210 D:181-210	30 30 30 30
1.7d	ENST00000229270	7d	ENSE00001385368	chr12:6979429-6980112	684	TPIS_HUMAN	248-286	39	4	A:210-248 B:210-248 C:210-247 D:210-245	39 39 38 36

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:245
 aligned with TPIS_HUMAN | P60174 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:245
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281     
           TPIS_HUMAN    42 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 286
               SCOP domains d2voma_ A: Triosephosphate isomerase                                                                                                                                                                                                                  SCOP domains
               CATH domains 2vomA00 A:4-248 Aldolase class I                                                                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhh....eeee...............hhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhhh..hhh.eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.......hhhhhhh.....eeeehhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------Y------------------------------A-------------------------------D-----------------R-------------------------------M---------------V------------------------------------------------------------M--------L-------- SAPs(SNPs)
                PROSITE (1) -TIM_2  PDB: A:5-246 UniProt: 43-284                                                                                                                                                                                                               -- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------TIM_1      --------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: A:4-38 [INCOMPLETE]----------------------------------------Exon 1.3  PDB: A:79-107      Exon 1.4b  PDB: A:108-152 UniProt: 146-190   ----------------------------Exon 1.6d  PDB: A:181-210     -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.2e  PDB: A:38-79 UniProt: 76-117   ------------------------------------------------------------------------Exon 1.5c  PDB: A:152-180    -----------------------------Exon 1.7d  PDB: A:210-248               Transcript 1 (2)
                 2vom A   4 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 248
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243

Chain B from PDB  Type:PROTEIN  Length:246
 aligned with TPIS_HUMAN | P60174 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:246
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
           TPIS_HUMAN    41 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 286
               SCOP domains d2vomb_ B: Triosephosphate isomerase                                                                                                                                                                                                                   SCOP domains
               CATH domains 2vomB00 B:3-248 Aldolase class I                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhh....eeee...............hhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhh...hhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.......hhhhhhhh....eeeehhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------Y------------------------------A-------------------------------D-----------------R-------------------------------M---------------V------------------------------------------------------------M--------L-------- SAPs(SNPs)
                PROSITE (1) --TIM_2  PDB: B:5-246 UniProt: 43-284                                                                                                                                                                                                               -- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------TIM_1      --------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: B:3-38 UniProt: 1-76----------------------------------------Exon 1.3  PDB: B:79-107      Exon 1.4b  PDB: B:108-152 UniProt: 146-190   ----------------------------Exon 1.6d  PDB: B:181-210     -------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2e  PDB: B:38-79 UniProt: 76-117   ------------------------------------------------------------------------Exon 1.5c  PDB: B:152-180    -----------------------------Exon 1.7d  PDB: B:210-248               Transcript 1 (2)
                 2vom B   3 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 248
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain C from PDB  Type:PROTEIN  Length:245
 aligned with TPIS_HUMAN | P60174 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:245
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
           TPIS_HUMAN    41 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 285
               SCOP domains d2vomc_ C: Triosephosphate isomerase                                                                                                                                                                                                                  SCOP domains
               CATH domains 2vomC00 C:3-247 Aldolase class I                                                                                                                                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhh....eeee...............hhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhh...hhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.......hhhhhhh.....eeeehhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------Y------------------------------A-------------------------------D-----------------R-------------------------------M---------------V------------------------------------------------------------M--------L------- SAPs(SNPs)
                PROSITE (1) --TIM_2  PDB: C:5-246 UniProt: 43-284                                                                                                                                                                                                               - PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------TIM_1      -------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: C:3-38 UniProt: 1-76----------------------------------------Exon 1.3  PDB: C:79-107      Exon 1.4b  PDB: C:108-152 UniProt: 146-190   ----------------------------Exon 1.6d  PDB: C:181-210     ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2e  PDB: C:38-79 UniProt: 76-117   ------------------------------------------------------------------------Exon 1.5c  PDB: C:152-180    -----------------------------Exon 1.7d  PDB: C:210-247 [INCOMPLETE] Transcript 1 (2)
                 2vom C   3 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 247
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain D from PDB  Type:PROTEIN  Length:242
 aligned with TPIS_HUMAN | P60174 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:242
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281  
           TPIS_HUMAN    42 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIIN 283
               SCOP domains d2vomd_ D: Triosephosphate isomerase                                                                                                                                                                                                               SCOP domains
               CATH domains 2vomD00 D:4-245 Aldolase class I                                                                                                                                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.....hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhh....eeee...............hhhhhhhh...eeee.hhhhhhh...hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhh...hhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.......hhhhhhh.....eeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------Y------------------------------A-------------------------------D-----------------R-------------------------------M---------------V------------------------------------------------------------M--------L----- SAPs(SNPs)
                PROSITE (1) -TIM_2  PDB: D:5-245 UniProt: 43-284                                                                                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------TIM_1      ------------------------------------------------------------------------ PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: D:4-38 [INCOMPLETE]----------------------------------------Exon 1.3  PDB: D:79-107      Exon 1.4b  PDB: D:108-152 UniProt: 146-190   ----------------------------Exon 1.6d  PDB: D:181-210     ----------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.2e  PDB: D:38-79 UniProt: 76-117   ------------------------------------------------------------------------Exon 1.5c  PDB: D:152-180    -----------------------------Exon 1.7d  PDB: D:210-245            Transcript 1 (2)
                 2vom D   4 RKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGDSDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIIN 245
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Triosephosphate isomerase (TIM) (148)

Family: Triosephosphate isomerase (TIM) (128)

Protein domain: Triosephosphate isomerase (126)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d2voma_	A:
1b	d2vomb_	B:
1c	d2vomc_	C:
1d	d2vomd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Human (Homo sapiens) (78)

1a	2vomB00	B:3-248
1b	2vomA00	A:4-248
1c	2vomC00	C:3-247
1d	2vomD00	D:4-245

(no "Pfam Domain" information available for 2VOM)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (TPIS_HUMAN | P60174)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004807	triose-phosphate isomerase activity	Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate.
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0061621	canonical glycolysis	The glycolytic process that begins with the conversion of glucose to glucose-6-phosphate by glucokinase activity. Glycolytic processes are the chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis.
	GO:0019682	glyceraldehyde-3-phosphate metabolic process	The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis.
	GO:0019563	glycerol catabolic process	The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0007275	multicellular organism development	The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	TPIS_HUMAN \| P60174	:	1hti 1klg 1klu 1wyi 2iam 2ian 2jk2 4br1 4e41 4poc 4pod 4unk 4unl 4zvj

1hti	TRIOSEPHOSPHATE ISOMERASE (TIM) COMPLEXED WITH 2-PHOSPHOGLYCOLIC ACID
1wyi	HUMAN TRIOSEPHOSPHATE ISOMERASE OF NEW CRYSTAL FORM

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