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2VOM
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
STRUCTURAL BASIS OF HUMAN TRIOSEPHOSPHATE ISOMERASE DEFICIENCY. MUTATION E104D AND CORRELATION TO SOLVENT PERTURBATION.
Authors
:
C. Rodriguez-Almazan, R. Arreola-Alemon, D. Rodriguez-Larrea, B. Aguirre-Lopez, M. T. De Gomez-Puyou, R. Perez-Montfort, M. Costas, A. Gomez-Puyou, A. Torres-Larios
Date
:
19 Feb 08 (Deposition) - 17 Jun 08 (Release) - 29 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Isomerase, Alternative Splicing, Fatty Acid Biosynthesis, Lipid Synthesis, Disease Mutation, Pentose Shunt, Phosphoprotein, Gluconeogenesis, Glycolysis, Acetylation, Polymorphism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Rodriguez-Almazan, R. Arreola-Alemon, D. Rodriguez-Larrea, B. Aguirre-Lopez, M. T. De Gomez-Puyou, R. Perez-Montfort, M. Costas, A. Gomez-Puyou, A. Torres-Larios
Structural Basis Of Human Triosephosphate Isomerase Deficiency: Mutation E104D Is Related To Alterations Of A Conserved Water Network At The Dimer Interface.
J. Biol. Chem. V. 283 23254 2008
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(8, 32)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_007534 (C41Y, chain A/B/C/D, )
2: VAR_007535 (G72A, chain A/B/C/D, )
3: VAR_007536 (D104D, chain A/B/C/D, )
4: VAR_007537 (G122R, chain A/B/C/D, )
5: VAR_007538 (V154M, chain A/B/C/D, )
6: VAR_007539 (I170V, chain A/B/C/D, )
7: VAR_007540 (V231M, chain A/B/C/D, )
8: VAR_007541 (F240L, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007534
C
79
Y
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
C
41
Y
2
UniProt
VAR_007535
G
110
A
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
G
72
A
3
UniProt
VAR_007536
E
142
D
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
D
104
D
4
UniProt
VAR_007537
G
160
R
TPIS_HUMAN
Unclassified
---
A/B/C/D
G
122
R
5
UniProt
VAR_007538
V
192
M
TPIS_HUMAN
Disease (TPID)
188138723
A/B/C/D
V
154
M
6
UniProt
VAR_007539
I
208
V
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
I
170
V
7
UniProt
VAR_007540
V
269
M
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
V
231
M
8
UniProt
VAR_007541
F
278
L
TPIS_HUMAN
Disease (TPID)
---
A/B/C/D
F
240
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: TIM_2 (A:5-246,B:5-246,C:5-246,D:5-245)
2: TIM_1 (A:163-173,B:163-173,C:163-173,D:16...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TIM_2
PS51440
Triosephosphate isomerase (TIM) family profile.
TPIS_HUMAN
43-284
4
A:5-246
B:5-246
C:5-246
D:5-245
2
TIM_1
PS00171
Triosephosphate isomerase active site.
TPIS_HUMAN
201-211
4
A:163-173
B:163-173
C:163-173
D:163-173
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Exons
(7, 28)
Info
All Exons
Exon 1.1a (A:4-38 | B:3-38 | C:3-38 | D:4-38)
Exon 1.2e (A:38-79 | B:38-79 | C:38-79 | D:38...)
Exon 1.3 (A:79-107 | B:79-107 | C:79-107 | D...)
Exon 1.4b (A:108-152 | B:108-152 | C:108-152 ...)
Exon 1.5c (A:152-180 | B:152-180 | C:152-180 ...)
Exon 1.6d (A:181-210 | B:181-210 | C:181-210 ...)
Exon 1.7d (A:210-248 | B:210-248 | C:210-247 ...)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2e
3: Boundary 1.2e/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5c
6: Boundary 1.5c/1.6d
7: Boundary 1.6d/1.7d
8: Boundary 1.7d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000229270
1a
ENSE00001164420
chr12:
6976283-6976845
563
TPIS_HUMAN
1-76
76
4
A:4-38
B:3-38
C:3-38
D:4-38
35
36
36
35
1.2e
ENST00000229270
2e
ENSE00000716159
chr12:
6978028-6978151
124
TPIS_HUMAN
76-117
42
4
A:38-79
B:38-79
C:38-79
D:38-79
42
42
42
42
1.3
ENST00000229270
3
ENSE00000716160
chr12:
6978263-6978347
85
TPIS_HUMAN
117-145
29
4
A:79-107
B:79-107
C:79-107
D:79-107
29
29
29
29
1.4b
ENST00000229270
4b
ENSE00000716161
chr12:
6978422-6978554
133
TPIS_HUMAN
146-190
45
4
A:108-152
B:108-152
C:108-152
D:108-152
45
45
45
45
1.5c
ENST00000229270
5c
ENSE00000716162
chr12:
6978852-6978937
86
TPIS_HUMAN
190-218
29
4
A:152-180
B:152-180
C:152-180
D:152-180
29
29
29
29
1.6d
ENST00000229270
6d
ENSE00000716163
chr12:
6979213-6979300
88
TPIS_HUMAN
219-248
30
4
A:181-210
B:181-210
C:181-210
D:181-210
30
30
30
30
1.7d
ENST00000229270
7d
ENSE00001385368
chr12:
6979429-6980112
684
TPIS_HUMAN
248-286
39
4
A:210-248
B:210-248
C:210-247
D:210-245
39
39
38
36
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2voma_ (A:)
1b: SCOP_d2vomb_ (B:)
1c: SCOP_d2vomc_ (C:)
1d: SCOP_d2vomd_ (D:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Triosephosphate isomerase (TIM)
(148)
Family
:
Triosephosphate isomerase (TIM)
(128)
Protein domain
:
Triosephosphate isomerase
(126)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2voma_
A:
1b
d2vomb_
B:
1c
d2vomc_
C:
1d
d2vomd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2vomB00 (B:3-248)
1b: CATH_2vomA00 (A:4-248)
1c: CATH_2vomC00 (C:3-247)
1d: CATH_2vomD00 (D:4-245)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
2vomB00
B:3-248
1b
2vomA00
A:4-248
1c
2vomC00
C:3-247
1d
2vomD00
D:4-245
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Pfam Domains
(0, 0)
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Asym.Unit (166 KB)
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