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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   FTSZ GDP M. JANNASCHII

Authors :   M. A. Oliva, J. Lowe

Date :   03 Sep 07 (Deposition) - 11 Sep 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Cell Division, Polymerization, Tubulin Homolog, Gtpase, Septation, Cell Cycle, Gtp-Binding, Nucleotide-Binding, Bacterial Cell Division Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Oliva, D. Trambaiolo, J. Lowe
Structural Insights Into The Conformational Variability Of Ftsz
J. Mol. Biol. V. 373 1229 2007
PubMed-ID: 17900614 | Reference-DOI: 10.1016/J.JMB.2007.08.056

Molecule 1 - CELL DIVISION PROTEIN FTSZ HOMOLOG 1
	Atcc	:	43067
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PHIS17
	Expression System Strain	:	BL21AI(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	243232
	Strain	:	DSM 2661
	Synonym	:	FTSZ

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 1)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:46 , GLY A:47 , ALA A:48 , GLY A:130 , LEU A:131 , GLY A:133 , GLY A:134 , THR A:135 , GLY A:136 , PRO A:161 , GLU A:165 , ARG A:169 , PHE A:208 , ALA A:211 , ASP A:212 , HOH A:2025 , HOH A:2130 , HOH A:2131 , HOH A:2190 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH A:2296 , HOH A:2297 , HOH A:2298 , HOH A:2299	BINDING SITE FOR RESIDUE GDP A1355

(no "SS Bond" information available for 2VAP)

(no "Cis Peptide Bond" information available for 2VAP)

(no "SAP(SNP)/Variant" information available for 2VAP)

Asymmetric/Biological Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSZ_1	PS01134	FtsZ protein signature 1.	FTSZ1_METJA	70-104	1	A:70-104
2	FTSZ_2	PS01135	FtsZ protein signature 2.	FTSZ1_METJA	123-144	1	A:123-144

(no "Exon" information available for 2VAP)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:335
 aligned with FTSZ1_METJA | Q57816 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:335
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349     
          FTSZ1_METJA    20 LELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRK 354
               SCOP domains d2vapa1 A:20-231 Cell-division protein FtsZ                                                                                                                                                                         d2vapa2 A:232-354 Cell-division protein FtsZ                                                                                SCOP domains
               CATH domains ------------------2vapA01 A:38-249  [code=3.40.50.1440, no name defined]                                                                                                                                                              2vapA02 A:250-354  [code=3.30.1330.20, no name defined]                                                   CATH domains
               Pfam domains -------------------Tubulin-2vapA02 A:39-210                                                                                                                                                    ------------------------------------FtsZ_C-2vapA01 A:247-341                                                                       ------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhh...eeeeeee.hhhhhhh....eeee.............hhhhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee.......eeeeeeee.hhh.eeee..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------FTSZ_1  PDB: A:70-104              ------------------FTSZ_2  PDB: A:123-144------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vap A  20 LELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRK 354
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (FTSZ1_METJA | Q57816)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0043093	FtsZ-dependent cytokinesis	A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0051258	protein polymerization	The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	FTSZ1_METJA \| Q57816
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	FTSZ1_METJA \| Q57816
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UniProtKB/Swiss-Prot
	FTSZ1_METJA \| Q57816	:	1fsz 1w58 1w59 1w5a 1w5b 1w5e

1fsz	CRYSTAL STRUCTURE OF THE CELL-DIVISION PROTEIN FTSZ AT 2.8ARESOLUTION
1w58	FTSZ GMPCPP SOAK I213 (M. JANNASCHII)
1w59	FTSZ DIMER, EMPTY (M. JANNASCHII)
1w5a	FTSZ DIMER, MGGTP SOAK (M. JANNASCHII)
1w5b	FTSZ DIMER, GTP SOAK (M. JANNASCHII)
1w5e	FTSZ W319Y MUTANT, P1 (M. JANNASCHII)

Description

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Ligands, Modified Residues, Ions (1, 1)

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