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(-) Description

Title :  FAST MATURING RED FLUORESCENT PROTEIN, DSRED.T4
 
Authors :  D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Date :  31 Aug 07  (Deposition) - 06 Nov 07  (Release) - 16 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Photoprotein, Fast Maturing, Fluorescent Protein, Dsred, Gfp-Like, Chromophore, Luminescence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Structural Rearrangements Near The Chromophore Influence The Maturation Speed And Brightness Of Dsred Variants.
Protein Eng. Des. Sel. V. 20 525 2007
PubMed-ID: 17962222  |  Reference-DOI: 10.1093/PROTEIN/GZM046

(-) Compounds

Molecule 1 - RED FLUORESCENT PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE31
    Expression System Strain: DH10B/PREP4
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: SEA ANEMONE
    Organism Scientific: DISCOSOMA SP.
    Organism Taxid: 86600
    Synonym: DSRED.T4

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 35)

Asymmetric Unit (2, 35)
No.NameCountTypeFull Name
1CRQ8Mod. Amino Acid[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID
2EDO27Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1CRQ4Mod. Amino Acid[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID
2EDO14Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (2, 17)
No.NameCountTypeFull Name
1CRQ4Mod. Amino Acid[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID
2EDO13Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS B:123 , GLU D:19 , GLY D:20 , SER D:21 , GLU D:26 , PHE D:124 , HOH D:2012BINDING SITE FOR RESIDUE EDO D1226
02AC2SOFTWARELYS C:45 , SER C:203 , HIS C:204 , ASN C:205 , ILE C:210 , GLU C:212 , HOH C:2209BINDING SITE FOR RESIDUE EDO C1226
03AC3SOFTWAREPRO H:80 , GLY H:191 , TYR H:192 , HIS H:221 , HOH H:2212 , HOH H:2213BINDING SITE FOR RESIDUE EDO H1226
04AC4SOFTWAREASP B:110 , LYS B:121 , LYS B:123 , HOH B:2222 , HOH B:2223 , GLU D:26BINDING SITE FOR RESIDUE EDO B1226
05AC5SOFTWAREGLU E:26 , ASP G:110 , LYS G:121 , LYS G:123 , HOH G:2219BINDING SITE FOR RESIDUE EDO G1226
06AC6SOFTWARELYS A:123 , EDO A:1228 , GLU C:19 , GLY C:20 , SER C:21 , PHE C:124 , ILE C:125 , HOH C:2012BINDING SITE FOR RESIDUE EDO C1227
07AC7SOFTWARETHR F:108 , ASP F:110 , LYS F:121 , LYS F:123 , HOH F:2227 , HOH F:2228 , GLU H:26BINDING SITE FOR RESIDUE EDO F1226
08AC8SOFTWAREGLN A:109 , ASP A:110 , LYS A:121 , LYS A:123 , HOH A:2216 , GLU C:26BINDING SITE FOR RESIDUE EDO A1226
09AC9SOFTWARELYS D:45 , SER D:203 , HIS D:204 , ILE D:210 , GLU D:212 , HOH D:2215 , HOH D:2234 , ASN F:205BINDING SITE FOR RESIDUE EDO D1227
10BC1SOFTWAREGLU B:26 , ASP D:110 , LYS D:121 , LYS D:123 , HOH D:2235BINDING SITE FOR RESIDUE EDO D1228
11BC2SOFTWAREGLU A:26 , THR C:108 , GLN C:109 , ASP C:110 , LYS C:121 , LYS C:123 , HOH C:2210BINDING SITE FOR RESIDUE EDO C1228
12BC3SOFTWARETHR E:108 , ASP E:110 , LYS E:121 , LYS E:123 , GLU G:26 , HOH G:2020BINDING SITE FOR RESIDUE EDO E1226
13BC4SOFTWAREGLY C:191 , TYR C:192 , HIS C:221 , HOH C:2211BINDING SITE FOR RESIDUE EDO C1229
14BC5SOFTWAREASN D:205 , SER F:203 , HIS F:204 , ASN F:205 , ILE F:210 , GLU F:212BINDING SITE FOR RESIDUE EDO F1227
15BC6SOFTWAREASN A:205 , LYS G:45 , SER G:203 , HIS G:204 , ILE G:210 , GLU G:212 , HOH G:2204BINDING SITE FOR RESIDUE EDO G1227
16BC7SOFTWAREGLU F:26 , THR H:108 , GLN H:109 , ASP H:110 , LYS H:121 , LYS H:123 , EDO H:1228 , HOH H:2214BINDING SITE FOR RESIDUE EDO H1227
17BC8SOFTWAREARG H:17 , GLU H:19 , LYS H:121 , VAL H:122 , LYS H:123 , EDO H:1227BINDING SITE FOR RESIDUE EDO H1228
18BC9SOFTWARESER A:203 , HIS A:204 , ASN A:205 , ILE A:210 , GLU A:212 , HOH A:2218BINDING SITE FOR RESIDUE EDO A1227
19CC1SOFTWARESER B:203 , ILE B:210 , GLU B:212 , HOH B:2224 , ASN H:205BINDING SITE FOR RESIDUE EDO B1227
20CC2SOFTWAREGLU F:19 , GLY F:20 , SER F:21 , GLU F:26 , PHE F:124 , HOH F:2015 , LYS H:123 , EDO H:1230BINDING SITE FOR RESIDUE EDO F1228
21CC3SOFTWAREASN B:205 , SER H:203 , HIS H:204 , ASN H:205 , ILE H:210 , GLU H:212 , HOH H:2215 , HOH H:2216BINDING SITE FOR RESIDUE EDO H1229
22CC4SOFTWAREGLY B:191 , TYR B:192 , HIS B:221BINDING SITE FOR RESIDUE EDO B1228
23CC5SOFTWARELYS F:123 , EDO F:1228 , GLU H:19 , GLY H:20 , SER H:21 , LYS H:123 , PHE H:124 , HOH H:2011BINDING SITE FOR RESIDUE EDO H1230
24CC6SOFTWAREPRO F:80 , PRO F:190 , GLY F:191 , TYR F:192 , HIS F:221 , HOH F:2230BINDING SITE FOR RESIDUE EDO F1229
25CC7SOFTWAREHIS C:204 , ASN C:205 , LYS E:45 , SER E:203 , HIS E:204 , ILE E:210 , GLU E:212 , HOH E:2213 , HOH E:2232BINDING SITE FOR RESIDUE EDO E1227
26CC8SOFTWAREGLU A:19 , GLY A:20 , SER A:21 , PHE A:124 , ILE A:125 , HOH A:2219 , LYS C:123 , EDO C:1227BINDING SITE FOR RESIDUE EDO A1228
27CC9SOFTWAREGLU B:19 , GLY B:20 , GLU B:26 , PHE B:124 , HOH B:2226 , LYS D:123BINDING SITE FOR RESIDUE EDO B1229

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VAE)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Gly A:52 -Pro A:53
2Phe A:87 -Pro A:88
3Gly B:52 -Pro B:53
4Phe B:87 -Pro B:88
5Gly C:52 -Pro C:53
6Phe C:87 -Pro C:88
7Gly D:52 -Pro D:53
8Phe D:87 -Pro D:88
9Gly E:52 -Pro E:53
10Phe E:87 -Pro E:88
11Gly F:52 -Pro F:53
12Phe F:87 -Pro F:88
13Gly G:52 -Pro G:53
14Phe G:87 -Pro G:88
15Gly H:52 -Pro H:53
16Phe H:87 -Pro H:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VAE)

(-) Exons   (0, 0)

(no "Exon" information available for 2VAE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaea_ A: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae A   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaeb_ B: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae B   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaec_ C: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae C   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaed_ D: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae D   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaee_ E: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae E   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaef_ F: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae F   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaeg_ G: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae G   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:217
 aligned with RFP_DISSP | Q9U6Y8 from UniProtKB/Swiss-Prot  Length:225

    Alignment length:219
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
            RFP_DISSP     7 VIKEFMRFKVRMEGTVNGHEFEIEGEGEGRPYEGHNTVKLKVTKGGPLPFAWDILSPQFQYGSKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEASTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERTEGRHHLFL 225
               SCOP domains d2vaeh_ H: automated matches                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) GFP-2vaeH01 H:7-222                                                                                                                                                                                                     --- Pfam domains (1)
           Pfam domains (2) GFP-2vaeH02 H:7-222                                                                                                                                                                                                     --- Pfam domains (2)
           Pfam domains (3) GFP-2vaeH03 H:7-222                                                                                                                                                                                                     --- Pfam domains (3)
           Pfam domains (4) GFP-2vaeH04 H:7-222                                                                                                                                                                                                     --- Pfam domains (4)
           Pfam domains (5) GFP-2vaeH05 H:7-222                                                                                                                                                                                                     --- Pfam domains (5)
           Pfam domains (6) GFP-2vaeH06 H:7-222                                                                                                                                                                                                     --- Pfam domains (6)
           Pfam domains (7) GFP-2vaeH07 H:7-222                                                                                                                                                                                                     --- Pfam domains (7)
           Pfam domains (8) GFP-2vaeH08 H:7-222                                                                                                                                                                                                     --- Pfam domains (8)
         Sec.struct. author .....eeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeee......hhhhhhhhh.--hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vae H   7 VIKEFMRFKVRMEGSVNGHEFEIEGEGEGRPYEGTQTAKLKVTKGGPLPFAWDILSPQFq--SKVYVKHPADIPDYKKLSFPEGFKWERVMNFEDGGVVTVTQDSSLQDGCFIYKVKFIGVNFPSDGPVMQKKTMGWEPSTERLYPRDGVLKGEIHKALKLKDGGHYLVEFKSIYMAKKPVQLPGYYYVDSKLDITSHNEDYTIVEQYERAEGRHHLFL 225
                                    16        26        36        46        56        66  |     76        86        96       106       116       126       136       146       156       166       176       186       196       206       216         
                                                                                      66-CRQ
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VAE)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: GFP (101)
(-)
Family: GFP (101)
(-)
Discosoma sp. (Sea anemone) (6)
1aGFP-2vaeH01H:7-222
1bGFP-2vaeH02H:7-222
1cGFP-2vaeH03H:7-222
1dGFP-2vaeH04H:7-222
1eGFP-2vaeH05H:7-222
1fGFP-2vaeH06H:7-222
1gGFP-2vaeH07H:7-222
1hGFP-2vaeH08H:7-222

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RFP_DISSP | Q9U6Y8)
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0006091    generation of precursor metabolites and energy    The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.

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  2vae
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RFP_DISSP | Q9U6Y8: 1g7k 1ggx 1zgo 1zgp 1zgq 2h5o 2h5r 2h8q 2v4e 2vad 4i2y 4kf4 4kf5

(-) Related Entries Specified in the PDB File

2vad MONOMERIC RED FLUORESCENT PROTEIN, DSRED.M1