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2VAE
Biol. Unit 1
Info
Asym.Unit (342 KB)
Biol.Unit 1 (170 KB)
Biol.Unit 2 (171 KB)
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(1)
Title
:
FAST MATURING RED FLUORESCENT PROTEIN, DSRED.T4
Authors
:
D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Date
:
31 Aug 07 (Deposition) - 06 Nov 07 (Release) - 16 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Photoprotein, Fast Maturing, Fluorescent Protein, Dsred, Gfp-Like, Chromophore, Luminescence
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Strongin, B. Bevis, N. Khuong, M. E. Downing, R. L. Strack, K. Sundaram, B. S. Glick, R. J. Keenan
Structural Rearrangements Near The Chromophore Influence The Maturation Speed And Brightness Of Dsred Variants.
Protein Eng. Des. Sel. V. 20 525 2007
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQa)
1b: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQb)
1c: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQc)
1d: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQd)
1e: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQe)
1f: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQf)
1g: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQg)
1h: [2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-... (CRQh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CRQ
4
Mod. Amino Acid
[2-(3-CARBAMOYL-1-IMINO-PROPYL)-4-(4-HYDROXY-BENZYLIDENE)-5-OXO-4,5-DIHYDRO-IMIDAZOL-1-YL]-ACETIC ACID
2
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC4 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC3 (SOFTWARE)
15: CC4 (SOFTWARE)
16: CC7 (SOFTWARE)
17: CC8 (SOFTWARE)
18: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:123 , GLU D:19 , GLY D:20 , SER D:21 , GLU D:26 , PHE D:124 , HOH D:2012
BINDING SITE FOR RESIDUE EDO D1226
02
AC2
SOFTWARE
LYS C:45 , SER C:203 , HIS C:204 , ASN C:205 , ILE C:210 , GLU C:212 , HOH C:2209
BINDING SITE FOR RESIDUE EDO C1226
03
AC4
SOFTWARE
ASP B:110 , LYS B:121 , LYS B:123 , HOH B:2222 , HOH B:2223 , GLU D:26
BINDING SITE FOR RESIDUE EDO B1226
04
AC6
SOFTWARE
LYS A:123 , EDO A:1228 , GLU C:19 , GLY C:20 , SER C:21 , PHE C:124 , ILE C:125 , HOH C:2012
BINDING SITE FOR RESIDUE EDO C1227
05
AC8
SOFTWARE
GLN A:109 , ASP A:110 , LYS A:121 , LYS A:123 , HOH A:2216 , GLU C:26
BINDING SITE FOR RESIDUE EDO A1226
06
AC9
SOFTWARE
LYS D:45 , SER D:203 , HIS D:204 , ILE D:210 , GLU D:212 , HOH D:2215 , HOH D:2234 , ASN F:205
BINDING SITE FOR RESIDUE EDO D1227
07
BC1
SOFTWARE
GLU B:26 , ASP D:110 , LYS D:121 , LYS D:123 , HOH D:2235
BINDING SITE FOR RESIDUE EDO D1228
08
BC2
SOFTWARE
GLU A:26 , THR C:108 , GLN C:109 , ASP C:110 , LYS C:121 , LYS C:123 , HOH C:2210
BINDING SITE FOR RESIDUE EDO C1228
09
BC4
SOFTWARE
GLY C:191 , TYR C:192 , HIS C:221 , HOH C:2211
BINDING SITE FOR RESIDUE EDO C1229
10
BC5
SOFTWARE
ASN D:205 , SER F:203 , HIS F:204 , ASN F:205 , ILE F:210 , GLU F:212
BINDING SITE FOR RESIDUE EDO F1227
11
BC6
SOFTWARE
ASN A:205 , LYS G:45 , SER G:203 , HIS G:204 , ILE G:210 , GLU G:212 , HOH G:2204
BINDING SITE FOR RESIDUE EDO G1227
12
BC9
SOFTWARE
SER A:203 , HIS A:204 , ASN A:205 , ILE A:210 , GLU A:212 , HOH A:2218
BINDING SITE FOR RESIDUE EDO A1227
13
CC1
SOFTWARE
SER B:203 , ILE B:210 , GLU B:212 , HOH B:2224 , ASN H:205
BINDING SITE FOR RESIDUE EDO B1227
14
CC3
SOFTWARE
ASN B:205 , SER H:203 , HIS H:204 , ASN H:205 , ILE H:210 , GLU H:212 , HOH H:2215 , HOH H:2216
BINDING SITE FOR RESIDUE EDO H1229
15
CC4
SOFTWARE
GLY B:191 , TYR B:192 , HIS B:221
BINDING SITE FOR RESIDUE EDO B1228
16
CC7
SOFTWARE
HIS C:204 , ASN C:205 , LYS E:45 , SER E:203 , HIS E:204 , ILE E:210 , GLU E:212 , HOH E:2213 , HOH E:2232
BINDING SITE FOR RESIDUE EDO E1227
17
CC8
SOFTWARE
GLU A:19 , GLY A:20 , SER A:21 , PHE A:124 , ILE A:125 , HOH A:2219 , LYS C:123 , EDO C:1227
BINDING SITE FOR RESIDUE EDO A1228
18
CC9
SOFTWARE
GLU B:19 , GLY B:20 , GLU B:26 , PHE B:124 , HOH B:2226 , LYS D:123
BINDING SITE FOR RESIDUE EDO B1229
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2vaea_ (A:)
1b: SCOP_d2vaeb_ (B:)
1c: SCOP_d2vaec_ (C:)
1d: SCOP_d2vaed_ (D:)
1e: SCOP_d2vaee_ (E:)
1f: SCOP_d2vaef_ (F:)
1g: SCOP_d2vaeg_ (G:)
1h: SCOP_d2vaeh_ (H:)
View:
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Classes
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(
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Folds
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)
(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Fluorescent proteins
(271)
Protein domain
:
automated matches
(102)
Coral (Discosoma sp.) [TaxId: 86600]
(17)
1a
d2vaea_
A:
1b
d2vaeb_
B:
1c
d2vaec_
C:
1d
d2vaed_
D:
1e
d2vaee_
E:
1f
d2vaef_
F:
1g
d2vaeg_
G:
1h
d2vaeh_
H:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_GFP_2vaeH01 (H:7-222)
1b: PFAM_GFP_2vaeH02 (H:7-222)
1c: PFAM_GFP_2vaeH03 (H:7-222)
1d: PFAM_GFP_2vaeH04 (H:7-222)
1e: PFAM_GFP_2vaeH05 (H:7-222)
1f: PFAM_GFP_2vaeH06 (H:7-222)
1g: PFAM_GFP_2vaeH07 (H:7-222)
1h: PFAM_GFP_2vaeH08 (H:7-222)
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Clans
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(
)
(
)
Clan
:
GFP
(101)
Family
:
GFP
(101)
Discosoma sp. (Sea anemone)
(6)
1a
GFP-2vaeH01
H:7-222
1b
GFP-2vaeH02
H:7-222
1c
GFP-2vaeH03
H:7-222
1d
GFP-2vaeH04
H:7-222
1e
GFP-2vaeH05
H:7-222
1f
GFP-2vaeH06
H:7-222
1g
GFP-2vaeH07
H:7-222
1h
GFP-2vaeH08
H:7-222
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Asymmetric Unit 1
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