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(-) Description

Title :  SOLUTION STRUCTURE OF THE FKBP-DOMAIN OF LEGIONELLA PNEUMOPHILA MIP
 
Authors :  A. Ceymann, M. Horstmann, P. Ehses, K. Schweimer, M. Steinert, T. Kamph G. Fischer, J. Hacker, P. Rosch, C. Faber
Date :  25 Apr 07  (Deposition) - 12 Jun 07  (Release) - 14 Jun 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Isomerase, Fkbp, Legionella Pneumophila, Ppiase, Legionnaires Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Horstmann, P. Ehses, K. Schweimer, M. Steinert, T. Kamphausen, G. Fischer, J. Hacker, P. Rosch, C. Faber
Domain Motions Of The Mip Protein From Legionella Pneumophila
Biochemistry V. 45 12303 2006
PubMed-ID: 17014083  |  Reference-DOI: 10.1021/BI060818I
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MACROPHAGE INFECTIVITY POTENTIATOR
    Chains: A
    EC Number: 5.2.1.8
    Fragment: FKBP DOMAIN, RESIDUES 97-233
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446
    Other Details: NMR SOLUTION STRUCTURE OF THE MONOMERIC FKBP-DOMAIN OF MIP. IN THE REFERENCES THE N-TERMINAL 20 AMINO ACID SIGNAL SEQUENCE IS MISSING (ALL AMINO ACID NUMBERS THERE ARE MODIFIED WITH -20)
    Other Details - Source: SURFACE EXPOSED PROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2UZ5)

(-) Sites  (0, 0)

(no "Site" information available for 2UZ5)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2UZ5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2UZ5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2UZ5)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.MIP_LEGPH144-230  1A:48-134
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.MIP_LEGPH144-230  1A:48-134

(-) Exons   (0, 0)

(no "Exon" information available for 2UZ5)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with MIP_LEGPH | Q5ZXE0 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:137
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       
            MIP_LEGPH    97 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 233
               SCOP domains d2uz5a_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains FKBP_N-2uz5A02 A:1-36               ----FKBP_C-2uz5A01 A:41-131                                                                    ------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeee...........eeeeeeeee.....eeee.......eeee.hh..hhhhhhhh......eeeee.hhhhh................eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------FKBP_PPIASE  PDB: A:48-134 UniProt: 144-230                                            --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2uz5 A   1 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       


Chain A from PDB  Type:PROTEIN  Length:137
 aligned with Q933L8_LEGPN | Q933L8 from UniProtKB/TrEMBL  Length:233

    Alignment length:137
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       
         Q933L8_LEGPN    97 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 233
               SCOP domains d2uz5a_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains FKBP_N-2uz5A02 A:1-36               ----FKBP_C-2uz5A01 A:41-131                                                                    ------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh............eeeeee...........eeeeeeeee.....eeee.......eeee.hh..hhhhhhhh......eeeee.hhhhh................eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2uz5 A   1 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2UZ5)

(-) Pfam Domains  (2, 2)

NMR Structure
(-)
Clan: no clan defined [family: FKBP_C] (58)
(-)
Clan: no clan defined [family: FKBP_N] (5)

(-) Gene Ontology  (7, 12)

NMR Structure(hide GO term definitions)
Chain A   (MIP_LEGPH | Q5ZXE0)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (Q933L8_LEGPN | Q933L8)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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        MIP_LEGPH | Q5ZXE0: 1fd9 2vcd

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