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(-) Description

Title :  SOLUTION STRUCTURE OF THE FKBP-DOMAIN OF LEGIONELLA PNEUMOPHILA MIP IN COMPLEX WITH RAPAMYCIN
 
Authors :  A. Ceymann, M. Horstmann, P. Ehses, K. Schweimer, A. -K. Paschke, G. Fischer, P. Roesch, C. Faber
Date :  20 Sep 07  (Deposition) - 02 Sep 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (16x)
Keywords :  Mip, Fkbp, Ppiase, Membrane, Rotamase, Sirolimus, Virulence, Isomerase, Rapamycin, Fkbp-Domain, Outer Membrane, Legionnaires Disease, Macrolide Antibiotic, Legionella Pneumophila (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ceymann, M. Horstmann, P. Ehses, K. Schweimer, A. -K. Paschke, M. Steinert, C. Faber
Solution Structure Of The Legionella Pneumophila Mip-Rapamycin Complex.
Bmc Struct. Biol. V. 8 17 2008
PubMed-ID: 18366641  |  Reference-DOI: 10.1186/1472-6807-8-17

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN MIP
    Cell: ALVEOLAR MACROPHAGES
    Chains: A
    EC Number: 5.2.1.8
    Fragment: FRAGMENT: FKBP DOMAIN, RESIDUES 97-233
    Organ: LUNG
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 446
    Other Details: SURFACE PROTEIN
    Other Details - Source: ALVEOLAR MACROPHAGES CAN BE HOSTS OF LEGIONELLA PNEUMOPHILA
    Synonym: MACROPHAGE INFECTIVITY POTENTIATOR, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, PPIASE, ROTAMASE
    Tissue: EPITHELIAL BARRIER

 Structural Features

(-) Chains, Units

  
NMR Structure (16x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1RAP1Ligand/IonRAPAMYCIN IMMUNOSUPPRESSANT DRUG

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:55 , PHE A:65 , ASP A:66 , PHE A:77 , GLN A:81 , VAL A:82 , ILE A:83 , PRO A:84 , TRP A:86 , ALA A:108 , TYR A:109BINDING SITE FOR RESIDUE RAP A 138

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VCD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VCD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VCD)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.MIP_LEGPH144-230  1A:48-134

(-) Exons   (0, 0)

(no "Exon" information available for 2VCD)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
 aligned with MIP_LEGPH | Q5ZXE0 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:137
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       
            MIP_LEGPH    97 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 233
               SCOP domains d2vcda_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains FKBP_N-2vcdA02 A:1-36               ----FKBP_C-2vcdA01 A:41-131                                                                    ------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh..eee.....eeeeee...........eeeee.eeee....eeee.......eeee....hhhhhhhhhhh....eeeeeehhhhh...............eeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------FKBP_PPIASE  PDB: A:48-134 UniProt: 144-230                                            --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vcd A   1 FNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKSS 137
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VCD)

(-) Pfam Domains  (2, 2)

NMR Structure
(-)
Clan: no clan defined [family: FKBP_C] (58)
(-)
Clan: no clan defined [family: FKBP_N] (5)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (MIP_LEGPH | Q5ZXE0)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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UniProtKB/Swiss-Prot
        MIP_LEGPH | Q5ZXE0: 1fd9 2uz5

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