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(-) Description

Title :  NMR STRUCTURE OF THE S. AUREUS VRAR DNA BINDING DOMAIN
 
Authors :  L. W. Donaldson
Date :  09 Jan 08  (Deposition) - 22 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Hth Luxr-Type Domain, Dna Binding Domain, Activator, Antibiotic Resistance, Cytoplasm, Dna-Binding, Phosphoprotein, Phosphorylation, Transcription, Transcription Regulation, Two-Component Regulatory System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. W. Donaldson
The Nmr Structure Of The Staphylococcus Aureus Response Regulator Vrar Dna Binding Domain Reveals A Dynamic Relationship Between It And Its Associated Receiver Domain
Biochemistry V. 47 3379 2008
PubMed-ID: 18293926  |  Reference-DOI: 10.1021/BI701844Q
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RESPONSE REGULATOR PROTEIN VRAR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET15B
    Expression System Vector Type: VECTOR
    Fragment: HTH LUXR-TYPE DOMAIN, UNP RESIDUES 138-209
    Gene: VRAR
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Other Details: CLONED AS NDEI/BAMHI FRAGMENT
    Strain: MU50

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2RNJ)

(-) Sites  (0, 0)

(no "Site" information available for 2RNJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RNJ)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with VRAR_STAAM | Q7A2Q1 from UniProtKB/Swiss-Prot  Length:209

    Alignment length:67
                                   152       162       172       182       192       202       
           VRAR_STAAM   143 ELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ 209
               SCOP domains d2rnja_ A: automated matches                                        SCOP domains
               CATH domains 2rnjA00 A:143-209 'winged helix' repressor DNA binding domain       CATH domains
               Pfam domains --GerE-2rnjA01 A:145-202                                    ------- Pfam domains
         Sec.struct. author .hhhhh.hhhhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 2rnj A 143 ELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ 209
                                   152       162       172       182       192       202
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: HTH (544)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (VRAR_STAAM | Q7A2Q1)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  VRAR_STAAM | Q7A2Q1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VRAR_STAAM | Q7A2Q1: 4gvp 4if4

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