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(-) Description

Title :  CRYSTAL STRUCTURE OF YRBI PHOSPHATASE FROM ESCHERICHIA COLI
 
Authors :  O. V. Tsodikov, P. Aggarwal, J. R. Rubin, J. A. Stuckey, R. W. Woodard, T.
Date :  11 Sep 07  (Deposition) - 23 Sep 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  I (1x),J (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x)
Biol. Unit 2:  A,B,C,D,E,F,G,H  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Biol. Unit 4:  E,F,G,H  (1x)
Biol. Unit 5:  I,J,K,L  (1x)
Biol. Unit 6:  M (1x),N (1x),O (1x),P (1x)
Keywords :  Yrbi, Phosphatase Kdo8-P, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Biswas, L. Yi, P. Aggarwal, J. Wu, J. R. Rubin, J. A. Stuckey, R. W. Woodard, O. V. Tsodikov
The Tail Of Kdsc: Conformational Changes Control The Activity Of A Haloacid Dehalogenase Superfamily Phosphatase
J. Biol. Chem. V. 284 30594 2009
PubMed-ID: 19726684  |  Reference-DOI: 10.1074/JBC.M109.012278

(-) Compounds

Molecule 1 - 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    EC Number: 3.1.3.45
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YRBI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: BL21
    Synonym: KDO 8-P PHOSPHATASE

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x):         I (1x)J (1x)K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)
Biological Unit 2 (1x): ABCDEFGH        
Biological Unit 3 (1x): ABCD            
Biological Unit 4 (1x):     EFGH        
Biological Unit 5 (1x):         IJKL    
Biological Unit 6 (1x):             M (1x)N (1x)O (1x)P (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:32 , GLY A:77 , LYS A:102 , SER B:187BINDING SITE FOR RESIDUE CL A 189
2AC2SOFTWAREASP B:32 , GLY B:77 , LYS B:102 , SER C:187BINDING SITE FOR RESIDUE CL B 189
3AC3SOFTWAREASP C:32 , GLY C:77 , LYS C:102 , SER D:187BINDING SITE FOR RESIDUE CL C 189
4AC4SOFTWAREASP G:32 , GLY G:77 , LYS G:102 , HOH G:230 , SER H:187BINDING SITE FOR RESIDUE CL G 189

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R8X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R8X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R8X)

(-) Exons   (0, 0)

(no "Exon" information available for 2R8X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xa_ A: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x A   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain B from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xb_ B: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhh...eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x B   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain C from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xc_ C: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x C   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain D from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xd_ D: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x D   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain E from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xe_ E: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x E   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain F from PDB  Type:PROTEIN  Length:172
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:172
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177  
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGK 179
               SCOP domains d2r8xf_ F: automated matches                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhh...eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x F   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGK 179
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177  


Chain G from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xg_ G: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x G   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain H from PDB  Type:PROTEIN  Length:183
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:183
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185   
           KDSC_ECOL6     6 ASLATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xh_ H: automated matches                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eehhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x H   6 ASLATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185   


Chain I from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xi_ I: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x I   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain J from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xj_ J: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeee.....eeeeeehhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhh..eeee....hhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x J   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain K from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xk_ K: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee.hhhhhhhh....eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeeee...hhhhhhhhhhhh..eeee...hhhhhhhhhhhhh..hhh.eeeee....hhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x K   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain L from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xl_ L: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x L   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain M from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xm_ M: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..ee.hhhhhhhhhh..eeee...........ee.....eeeeeehhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x M   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain N from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xn_ N: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....ee...hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x N   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain O from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xo_ O: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee...........ee.....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x O   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain P from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8xp_ P: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------Hydrolase_3-2r8xP01 P:88-167                                                    --------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------Hydrolase_3-2r8xP02 P:88-167                                                    --------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------Hydrolase_3-2r8xP03 P:88-167                                                    --------------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------Hydrolase_3-2r8xP04 P:88-167                                                    --------------------- Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------Hydrolase_3-2r8xP05 P:88-167                                                    --------------------- Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------Hydrolase_3-2r8xP06 P:88-167                                                    --------------------- Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------Hydrolase_3-2r8xP07 P:88-167                                                    --------------------- Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------Hydrolase_3-2r8xP08 P:88-167                                                    --------------------- Pfam domains (8)
           Pfam domains (9) --------------------------------------------------------------------------------Hydrolase_3-2r8xP09 P:88-167                                                    --------------------- Pfam domains (9)
          Pfam domains (10) --------------------------------------------------------------------------------Hydrolase_3-2r8xP10 P:88-167                                                    --------------------- Pfam domains (10)
          Pfam domains (11) --------------------------------------------------------------------------------Hydrolase_3-2r8xP11 P:88-167                                                    --------------------- Pfam domains (11)
          Pfam domains (12) --------------------------------------------------------------------------------Hydrolase_3-2r8xP12 P:88-167                                                    --------------------- Pfam domains (12)
          Pfam domains (13) --------------------------------------------------------------------------------Hydrolase_3-2r8xP13 P:88-167                                                    --------------------- Pfam domains (13)
          Pfam domains (14) --------------------------------------------------------------------------------Hydrolase_3-2r8xP14 P:88-167                                                    --------------------- Pfam domains (14)
          Pfam domains (15) --------------------------------------------------------------------------------Hydrolase_3-2r8xP15 P:88-167                                                    --------------------- Pfam domains (15)
          Pfam domains (16) --------------------------------------------------------------------------------Hydrolase_3-2r8xP16 P:88-167                                                    --------------------- Pfam domains (16)
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....ee...hhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8x P   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2R8X)

(-) Pfam Domains  (1, 16)

Asymmetric Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (KDSC_ECOL6 | P67653)
molecular function
    GO:0019143    3-deoxy-manno-octulosonate-8-phosphatase activity    Catalysis of the reaction: 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + H(2)O = 3-deoxy-D-manno-octulosonate + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KDSC_ECOL6 | P67653: 2r8e 2r8y 2r8z 3hyc 3i6b

(-) Related Entries Specified in the PDB File

2r8e SAME PROTEIN COMPLEXES WITH MG2+
2r8y SAME PROTEIN COMPLEXES WITH CA2+
2r8z SAME PROTEIN COMPLEXES WITH PHOSPHATE AND CA2+