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(-) Description

Title :  CRYSTAL STRUCTURE OF YRBI FROM ESCHERICHIA COLI IN COMPLEX WITH MG
 
Authors :  O. V. Tsodikov, P. Aggarwal, J. R. Rubin, J. A. Stuckey, R. Woodard, T. Biswas
Date :  10 Sep 07  (Deposition) - 23 Sep 08  (Release) - 03 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (1x)
Biol. Unit 2:  A,B,C,D  (1x)
Biol. Unit 3:  E,F,G,H  (1x)
Keywords :  Phosphatase, Yrbi, Divalent Metal, Had Superfamily, Kdo 8-P, Hydrolase, Lipopolysaccharide Biosynthesis, Magnesium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Biswas, L. Yi, P. Aggarwal, J. Wu, J. R. Rubin, J. A. Stuckey, R. W. Woodard, O. V. Tsodikov
The Tail Of Kdsc: Conformational Changes Control The Activity Of A Haloacid Dehalogenase Superfamily Phosphatase.
J. Biol. Chem. V. 284 30594 2009
PubMed-ID: 19726684  |  Reference-DOI: 10.1074/JBC.M109.012278
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE PHOSPHATASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.1.3.45
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: KDSC
    Organism Scientific: ESCHERICHIA COLI O6
    Organism Taxid: 217992
    Strain: BL21
    Synonym: KDO 8-P PHOSPHATASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCDEFGH
Biological Unit 2 (1x): ABCD    
Biological Unit 3 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:32 , ASP A:34 , ASP A:125 , HOH A:345 , HOH A:346 , HOH A:347BINDING SITE FOR RESIDUE MG A 201
02AC2SOFTWAREASP B:32 , ASP B:34 , ASP B:125 , HOH B:351 , HOH B:352 , HOH B:353BINDING SITE FOR RESIDUE MG B 202
03AC3SOFTWAREASP C:32 , ASP C:34 , ASP C:125 , HOH C:355 , HOH C:356 , HOH C:474BINDING SITE FOR RESIDUE MG C 203
04AC4SOFTWAREASP D:32 , ASP D:34 , ASP D:125 , HOH D:366 , HOH D:367 , HOH D:368BINDING SITE FOR RESIDUE MG D 204
05AC5SOFTWAREASP E:32 , ASP E:34 , ASP E:125 , HOH E:472 , HOH E:473 , HOH G:478BINDING SITE FOR RESIDUE MG E 205
06AC6SOFTWAREASP F:32 , ASP F:34 , ASP F:125 , HOH F:478 , HOH H:488 , HOH H:489BINDING SITE FOR RESIDUE MG F 206
07AC7SOFTWAREHOH F:479 , ASP G:32 , ASP G:34 , ASP G:125 , HOH G:479 , HOH G:480BINDING SITE FOR RESIDUE MG G 207
08AC8SOFTWAREHOH E:474 , ASP H:32 , ASP H:34 , ASP H:125 , HOH H:490 , HOH H:491BINDING SITE FOR RESIDUE MG H 208
09AC9SOFTWAREASP F:32 , GLY F:77 , LYS F:102 , HOH H:489BINDING SITE FOR RESIDUE CL F 305
10BC1SOFTWAREASP E:32 , GLY E:77 , LYS E:102 , HOH G:478BINDING SITE FOR RESIDUE CL E 306
11BC2SOFTWAREHOH F:479 , ASP G:32 , GLY G:77 , LYS G:102BINDING SITE FOR RESIDUE CL G 307
12BC3SOFTWAREHOH E:474 , ASP H:32 , GLY H:77 , LYS H:102BINDING SITE FOR RESIDUE CL H 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R8E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R8E)

(-) Exons   (0, 0)

(no "Exon" information available for 2R8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:173
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
               SCOP domains d2r8ea_ A: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e A   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:173
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
               SCOP domains d2r8eb_ B: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e B   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   


Chain C from PDB  Type:PROTEIN  Length:173
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:173
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
               SCOP domains d2r8ec_ C: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e C   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   


Chain D from PDB  Type:PROTEIN  Length:173
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:173
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
               SCOP domains d2r8ed_ D: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh..eee.....hhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e D   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKL 180
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177   


Chain E from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8ee_ E: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh...ee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e E   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain F from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8ef_ F: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh...ee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e F   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain G from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8eg_ G: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh...ee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e G   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 


Chain H from PDB  Type:PROTEIN  Length:181
 aligned with KDSC_ECOL6 | P67653 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:181
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 
           KDSC_ECOL6     8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
               SCOP domains d2r8eh_ H: automated matches                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------Hydrolase_3-2r8eH01 H:88-167                                                    --------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------Hydrolase_3-2r8eH02 H:88-167                                                    --------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------Hydrolase_3-2r8eH03 H:88-167                                                    --------------------- Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------Hydrolase_3-2r8eH04 H:88-167                                                    --------------------- Pfam domains (4)
           Pfam domains (5) --------------------------------------------------------------------------------Hydrolase_3-2r8eH05 H:88-167                                                    --------------------- Pfam domains (5)
           Pfam domains (6) --------------------------------------------------------------------------------Hydrolase_3-2r8eH06 H:88-167                                                    --------------------- Pfam domains (6)
           Pfam domains (7) --------------------------------------------------------------------------------Hydrolase_3-2r8eH07 H:88-167                                                    --------------------- Pfam domains (7)
           Pfam domains (8) --------------------------------------------------------------------------------Hydrolase_3-2r8eH08 H:88-167                                                    --------------------- Pfam domains (8)
         Sec.struct. author ........hhhhhhhhhh..eeee.........eeeee....eeeeeehhhhhhhhhhhh...eeeee....hhhhhhhhhhhh...ee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhh...eeee.......hhhhh.ee.......hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r8e H   8 LATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAKGQSI 188
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2R8E)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (KDSC_ECOL6 | P67653)
molecular function
    GO:0019143    3-deoxy-manno-octulosonate-8-phosphatase activity    Catalysis of the reaction: 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + H(2)O = 3-deoxy-D-manno-octulosonate + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

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  2r8e
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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  3.1.3.45
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    Pathway: KEGG | MetaCyc
 
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  (no 'MIM ID' available)
    Disease Information: OMIM
 
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
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  KDSC_ECOL6 | P67653
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KDSC_ECOL6 | P67653: 2r8x 2r8y 2r8z 3hyc 3i6b

(-) Related Entries Specified in the PDB File

2r8x APO PROTEIN
2r8y SAME PROTEIN COMPLEXED WITH CA2+
2r8z SAME PROTEIN COMPLEXED WITH PHOSPHATE AND CA2+